PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN542178.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 348aa    MW: 38841.7 Da    PI: 8.6718
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN542178.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.25.5e-52191601128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtd e++  yL +k  + +++    i evd++k+ePwdLp+k+k +ekewyfF+++d ky+tg r+nratk+gyWkatgkd+e+
  KN542178.1_FGP002  19 LPPGFRFHPTDAEVILSYLLQKFLNPSFTS-LPIGEVDLNKCEPWDLPSKAKMGEKEWYFFCHKDMKYPTGMRTNRATKEGYWKATGKDREI 109
                        79*************************888.56***************99999*************************************** PP

                NAM  93 lsk...............kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++               k++lvg+kktLvfy grapkg+kt+Wvmhe+rl
  KN542178.1_FGP002 110 FRQpaavntssyggssnkKKQLVGMKKTLVFYMGRAPKGTKTNWVMHEFRL 160
                        **99999888888887766667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-5916187IPR003441NAC domain
PROSITE profilePS5100553.33719187IPR003441NAC domain
PfamPF023658.1E-2620160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MVETSTSLVK LEQDGSLFLP PGFRFHPTDA EVILSYLLQK FLNPSFTSLP IGEVDLNKCE  60
PWDLPSKAKM GEKEWYFFCH KDMKYPTGMR TNRATKEGYW KATGKDREIF RQPAAVNTSS  120
YGGSSNKKKQ LVGMKKTLVF YMGRAPKGTK TNWVMHEFRL HANLHNHHPN LRLNPKDEWV  180
VCKVFHKKQG DEAINNQQQQ PQYAAVDQYS AETPNSGSSV VQAGDIDGGD DFFQLDDIID  240
PSIYFVSNSS NNFSAPPNNN NNAVYSVSAT GGAHGIGSSY YNLQQQQAAM VKALENVIAV  300
PNFGTLLPSS NKLKGLSRSA MAGVTQQNPL GVPQYKIENY GDHYISRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-491718815166NO APICAL MERISTEM PROTEIN
1ut4_B4e-491718815166NO APICAL MERISTEM PROTEIN
1ut7_A4e-491718815166NO APICAL MERISTEM PROTEIN
1ut7_B4e-491718815166NO APICAL MERISTEM PROTEIN
3swm_A4e-491718818169NAC domain-containing protein 19
3swm_B4e-491718818169NAC domain-containing protein 19
3swm_C4e-491718818169NAC domain-containing protein 19
3swm_D4e-491718818169NAC domain-containing protein 19
3swp_A4e-491718818169NAC domain-containing protein 19
3swp_B4e-491718818169NAC domain-containing protein 19
3swp_C4e-491718818169NAC domain-containing protein 19
3swp_D4e-491718818169NAC domain-containing protein 19
4dul_A4e-491718815166NAC domain-containing protein 19
4dul_B4e-491718815166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN542178.1_FGP002
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1822780.0AB182278.1 Oryza sativa Japonica Group mRNA for ONAC300, complete cds.
GenBankAK2876660.0AK287666.1 Oryza sativa Japonica Group cDNA, clone: J065117E22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620530.10.0NAC domain-containing protein 77
SwissprotQ5CD170.0NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLA0A0E0J6650.0A0A0E0J665_ORYNI; Uncharacterized protein
STRINGONIVA12G01160.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.23e-72Arabidopsis NAC domain containing protein 87