PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN542079.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 136aa MW: 14567.9 Da PI: 7.9439 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 40.7 | 4.7e-13 | 74 | 105 | 16 | 47 |
TT-SS-EEEEEE-STT---EEEEEE-SSSTTE CS WRKY 16 kgsefprsYYrCtsagCpvkkkversaedpkv 47 k + prsYYrCt+++Cpvkk+vers +d v KN542079.1_FGP001 74 KRPRQPRSYYRCTTQKCPVKKRVERSYQDAAV 105 556789*********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 0.0034 | 71 | 108 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.2E-9 | 74 | 105 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.0E-10 | 74 | 105 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.5E-8 | 74 | 102 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 11.244 | 79 | 102 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MTPNSMSVSS TSSEACGVGG GGAGGDEESA GKCKKEEGDG GDDDGKEGSA TTKGDGDGED 60 KNKKGGKGKG KGEKRPRQPR SYYRCTTQKC PVKKRVERSY QDAAVHFMAQ DYGLLQDMFI 120 PSPFLHNDYP NNNNHR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN542079.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC120986 | 8e-85 | AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence. | |||
GenBank | AP014961 | 8e-85 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 8e-85 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008650015.1 | 5e-23 | WRKY transcription factor WRKY51 | ||||
TrEMBL | A0A1D6MCY1 | 1e-21 | A0A1D6MCY1_MAIZE; Putative WRKY DNA-binding domain superfamily protein | ||||
TrEMBL | A0A3L6EFF8 | 1e-21 | A0A3L6EFF8_MAIZE; Putative WRKY transcription factor 71 | ||||
STRING | OMERI03G29260.1 | 2e-24 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46350.1 | 2e-10 | WRKY DNA-binding protein 8 |