PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541974.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 382aa    MW: 42547.5 Da    PI: 6.7315
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541974.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.97.1e-5241311128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeel+v+yL +++++ k+++  +i+ev+iyk++PwdLp k+  +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++
  KN541974.1_FGP001   4 LPPGFRFHPTDEELIVHYLMNQAASIKCPV-PIIAEVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSI 94 
                        79****************************.88***************8777899************************************* PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ls+ ++ ++g+kk Lvfykg+ pkg+ktdW+mheyrl
  KN541974.1_FGP001  95 LSTpTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRL 131
                        *9988899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.14E-632165IPR003441NAC domain
PROSITE profilePS5100558.94165IPR003441NAC domain
PfamPF023652.3E-265131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MPALPPGFRF HPTDEELIVH YLMNQAASIK CPVPIIAEVN IYKCNPWDLP GKALFGENEW  60
YFFSPRDRKY PNGARPNRAA GSGYWKATGT DKSILSTPTS DNIGVKKALV FYKGKPPKGV  120
KTDWIMHEYR LTGTSVNNTT TTKQRRASSM TMRLDDWVLC RIHKKSNDFN SSDQHDQEPE  180
GSTVEQLEDI HDNNSSEAPA PADMNNQQSD FQPMTAMSMS KSCSLTDLLN NLDCAALSQF  240
LLDGSSDAIA ELPAPPSPLI YPNQTLNYNI NNNMPHAFES RLDHHDGYVN NYNVNGLRRK  300
RMMACSATSF DDGSSSSSDF LRVAKKPQLL PSDSRGSGFG GGYCNQQLSE TATGFQFQNG  360
NLLSHPFPLN QQLLLNNHLQ TQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-73417115174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541974.1_FGP001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0004950.0BX000495.1 Oryza sativa chromosome 12, . BAC OSJNBb0119L20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620532.10.0NAC transcription factor 29
SwissprotQ8H4S46e-84NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBLA0A0D3HQU80.0A0A0D3HQU8_9ORYZ; Uncharacterized protein
STRINGOBART12G01290.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38033775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.15e-82NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]