PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541674.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 640aa    MW: 73270.3 Da    PI: 9.4644
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541674.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.8e-07425465346
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +WT+eE e++ + v++ G+  W + a+++g  +++ ++k+ w+ 
  KN541674.1_FGP001 425 KWTPEEYEKIRRHVEKNGTS-WISLAQELG--KSEIHLKDTWRR 465
                        8*****************99.********8..9*******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.2349420IPR001005SANT/Myb domain
PROSITE profilePS500903.95352418IPR017877Myb-like domain
SuperFamilySSF466897.19E-7398472IPR009057Homeodomain-like
SMARTSM007170.51422469IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-6424472IPR009057Homeodomain-like
PROSITE profilePS500906.806425467IPR017877Myb-like domain
PfamPF139211.3E-5426469No hitNo description
SMARTSM0071721487553IPR001005SANT/Myb domain
PROSITE profilePS500906.574488551IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.1E-5490570IPR009057Homeodomain-like
SuperFamilySSF466891.24E-6531609IPR009057Homeodomain-like
PROSITE profilePS500907.898553606IPR017877Myb-like domain
SMARTSM0071737557608IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MGGEGAERRS KKKEKGKRQE EKAESGRRGD GEAVKLDLAT DFPSNSMGKV AMDVEEAKEV  60
HRRRKKKNKE KEKGHGKEKK NNVSPDNVEE ACAEAEQAEA SGLKVEQHCS EHVEGDMIKC  120
GSEEDKSIKK DNKLKKKKKK ERKVEMAGDG QVLAGSTDEN AGLEHAEMGR GEKEQGKKSK  180
KSKRKHEDGE PVADGSAGDE IMTNRDKKRR RKEHSVELKE GDQVNISKKA VKTKGNKKRK  240
NESDKFNPDL STDALTGEDK VGGDGKNDKR KKKNDTSTRR NEVGRDDKND KKKKKSREGN  300
SGRKGEKEKA AQSKDKVRRV SFSDAVEVFS INDGEDEDNG KSAESEVVHG KRFTPEENAT  360
LMEAIMSYIE MKQLGENGLE MIRACSKHPE LKGCWAEIGK SLPHRPLTAI YKRARILLYR  420
SDERKWTPEE YEKIRRHVEK NGTSWISLAQ ELGKSEIHLK DTWRRIKPKN LKSVARFCIS  480
IKWKDSLQSQ WTQDEYQNLF DLVNLDLRVK AHQEYDAGNR KLRDNIAWEA ISDKLTTRNH  540
KNCCLKWYYQ LASPLVQKGI WADTDDYRLV EALQNVDAVC VEDIDWDNLL DHRSGEVCRQ  600
RWNEMVRHLG GHKEKPFIEQ VEVLSKRYCP EMVDYREGEP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132139KLKKKKKK
2134142KKKKKKERK
3206211KKRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541674.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061660.0AP006166.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1435D02.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643783.10.0RNA polymerase I termination factor isoform X1
TrEMBLA0A0E0PWS90.0A0A0E0PWS9_ORYRU; Uncharacterized protein
STRINGORUFI06G12620.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.16e-96MYB_related family protein