PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN541034.1_FGP003

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 1359aa MW: 152884 Da PI: 7.4478

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN541034.1_FGP003	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	66.5	7.8e-21	1006	1116	17	127
NAM 17 eyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkat.gkdkevlsk.kgelvgl 102 L++k+++++ + +++i+ v++y+v+Pw+L++ +v++++ w +F+++ k+ ++r+t sgyWka+ g +++++ + +g +g+ KN541034.1_FGP003 1006 LLLTNKLDKQPDDPTHTIPVVGVYSVDPWQLKAkaEVDTRKGPWLYFCPEPGKEG----SSRSTPSGYWKAQaGPSRRIIYStGGLPIGV 1091 57999****888789**********952355556669**998864....7999***76255666555438889* PP NAM 103 kktLvfykgrapkgektdWvmheyr 127 k+t+vf+ +a++++kt W+m+e++ KN541034.1_FGP003 1092 KNTMVFHYSSAESATKTGWIMDEFT 1116 ***********************97 PP
2	WRKY	43	9.3e-14	1241	1301	6	59
-EEEEEEE--T.T-SS-EEEEEE-ST...T---EEEEEE-S..SS.TTEEEEEEES--SS- CS WRKY 6 nWrKYGqKevk.gsefprsYYrCtsa...gCpvkkkversa..ed.pkvveitYegeHnhe 59 +Wr YGqK + +s+ prsYYrCt++ +Cp+++ v++ + d + + e+ geH+++ KN541034.1_FGP003 1241 SWRMYGQKYIDvDSRWPRSYYRCTHRpthDCPATRTVQQRRctGDgTPMYEVLDYGEHTCP 1301 6*******75899******9999****965422441468999999*997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd14798	1.38E-9	6	98	No hit	No description
Pfam	PF00931	9.2E-56	185	463	IPR002182	NB-ARC
SuperFamily	SSF52540	3.62E-53	185	439	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Gene3D	G3DSA:3.40.50.300	5.0E-15	186	355	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PRINTS	PR00364	2.2E-14	205	220	No hit	No description
PRINTS	PR00364	2.2E-14	277	291	No hit	No description
PRINTS	PR00364	2.2E-14	374	388	No hit	No description
SuperFamily	SSF52058	6.46E-24	504	889	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	1.6E-11	578	850	IPR032675	Leucine-rich repeat domain, L domain-like
PRINTS	PR00364	2.2E-14	727	743	No hit	No description
PROSITE profile	PS51005	23.629	986	1142	IPR003441	NAC domain
SuperFamily	SSF101941	9.29E-24	1005	1142	IPR003441	NAC domain
Pfam	PF02365	1.5E-9	1036	1116	IPR003441	NAC domain
Gene3D	G3DSA:2.20.25.80	1.2E-13	1225	1302	IPR003657	WRKY domain
SMART	SM00774	2.0E-14	1234	1302	IPR003657	WRKY domain
Pfam	PF03106	1.7E-14	1241	1301	IPR003657	WRKY domain
SuperFamily	SSF118290	7.19E-13	1241	1302	IPR003657	WRKY domain
PROSITE profile	PS50811	10.039	1242	1281	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043531	Molecular Function	ADP binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1359 aa Download sequence Send to blast
MFNLPRRIEG LLRRHGNILP KGAEEEIPLI KRDLEEIISI LHDHNHDDEE TEGHASGAIM 60 VRRCWTKEVR ELGYDIEDCI DQYEHGAAGC SSSRSIPHPR RKITRRRRRT TKMPPRLPDK 120 LKQRLWMANM IREFSLRVQE ALQRHGTYNL GGSSSSTNDD ASSDHRLSVG EYAHDCRHFG 180 IHSSTAMDKL REWLDVDGGA EKLKVVFLVG AGGVGKTTVA GELYGELRRR FECGAFVRTS 240 QKPNITRLLI SMLSQVRPHQ SPENWKVHTL ISSIRTHLQD KRYLIVIDDL WATSTWDIIK 300 CALPDGNNCS RILTTTEIED LAFQSYDYDY KYVFKMKPLG EDDSRDLFFS TVFGPNSTCP 360 TNLREVSCDI IRKCGGLPLA IVTIASLLAK LRKWEQWGYV NKDLGYSLMT NPTMEGIKQV 420 MNLSYNNLPQ HLKPCMLYLS IYQEDYIIWK DDLVNQWMAE GLIYGTQGHD NEDISGTYFE 480 ELVGRKMVQP VHINENGKVL SCVIHPMVLN FIKYKSIEEN FITAIDHSQI NTVIADKVRR 540 LSIHFGNTKD ASIPTNMRLS QVRTLAIFGF FKCIPFIMDF RLLKVLILHF WDDKDSTSFD 600 LTKISELFRL RYLKIISNVT LKLQKQIQGL QHLETLQIDA RVSAVPSDIT HLTGLLHLNL 660 PADTVLPDGI GQMASLRTLS FYLNGNSIEN VISLGELTNI RDLQFTCSSI QPDNLKKKMQ 720 CLGSIIEKLK NLKSITLLHT RSSYANNSLE DAGATSMRIH VDGLSSVSSP PAHLERLELL 780 PRICILSYFP MWIGNLSKLC ILKIGVRELV KNDIDVLGGL PALIVLSLYV HTKPEEIIVF 840 DKTGFPVLKY LKFNCCVPWL RFKEDSMHNL RKLKLGYNAH RADEESTIPD GMEYLSLHLN 900 EVSVKIGVAD PEKYDKLSAE LEYKLAFGFD MIHPTVTIRC VKHMFDCKVS KSSLAQEDYG 960 KVEQHEILEE DTDVPDEVDE IKQDSGQEAS KCTDSNSTLS DRHILLLLTN KLDKQPDDPT 1020 HTIPVVGVYS VDPWQLKAKA EVDTRKGPWL YFCPEPGKEG SSRSTPSGYW KAQAGPSRRI 1080 IYSTGGLPIG VKNTMVFHYS SAESATKTGW IMDEFTAFHN EGGGTTIPKP RSDISLCRLY 1140 TTQGPSALCS TEGSSSEWPI RRGMVPRMEG ALEDPKQCEK GTTTEGKGII ESVLLAGENA 1200 NKNAHKSRKR RATESRLGGS RQLVRKVMTS CDPNADGLSG SWRMYGQKYI DVDSRWPRSY 1260 YRCTHRPTHD CPATRTVQQR RCTGDGTPMY EVLDYGEHTC PVQHQQQLPS HSDDDRGSGI 1320 SAALQQPGAA DTGAAVHVTT TTSVSGSASP ASSPPAGNT

Sequence ? help Back to Top

Protein Sequence Length: 1359 aa Download sequence Send to blast

MFNLPRRIEG LLRRHGNILP KGAEEEIPLI KRDLEEIISI LHDHNHDDEE TEGHASGAIM  60
VRRCWTKEVR ELGYDIEDCI DQYEHGAAGC SSSRSIPHPR RKITRRRRRT TKMPPRLPDK  120
LKQRLWMANM IREFSLRVQE ALQRHGTYNL GGSSSSTNDD ASSDHRLSVG EYAHDCRHFG  180
IHSSTAMDKL REWLDVDGGA EKLKVVFLVG AGGVGKTTVA GELYGELRRR FECGAFVRTS  240
QKPNITRLLI SMLSQVRPHQ SPENWKVHTL ISSIRTHLQD KRYLIVIDDL WATSTWDIIK  300
CALPDGNNCS RILTTTEIED LAFQSYDYDY KYVFKMKPLG EDDSRDLFFS TVFGPNSTCP  360
TNLREVSCDI IRKCGGLPLA IVTIASLLAK LRKWEQWGYV NKDLGYSLMT NPTMEGIKQV  420
MNLSYNNLPQ HLKPCMLYLS IYQEDYIIWK DDLVNQWMAE GLIYGTQGHD NEDISGTYFE  480
ELVGRKMVQP VHINENGKVL SCVIHPMVLN FIKYKSIEEN FITAIDHSQI NTVIADKVRR  540
LSIHFGNTKD ASIPTNMRLS QVRTLAIFGF FKCIPFIMDF RLLKVLILHF WDDKDSTSFD  600
LTKISELFRL RYLKIISNVT LKLQKQIQGL QHLETLQIDA RVSAVPSDIT HLTGLLHLNL  660
PADTVLPDGI GQMASLRTLS FYLNGNSIEN VISLGELTNI RDLQFTCSSI QPDNLKKKMQ  720
CLGSIIEKLK NLKSITLLHT RSSYANNSLE DAGATSMRIH VDGLSSVSSP PAHLERLELL  780
PRICILSYFP MWIGNLSKLC ILKIGVRELV KNDIDVLGGL PALIVLSLYV HTKPEEIIVF  840
DKTGFPVLKY LKFNCCVPWL RFKEDSMHNL RKLKLGYNAH RADEESTIPD GMEYLSLHLN  900
EVSVKIGVAD PEKYDKLSAE LEYKLAFGFD MIHPTVTIRC VKHMFDCKVS KSSLAQEDYG  960
KVEQHEILEE DTDVPDEVDE IKQDSGQEAS KCTDSNSTLS DRHILLLLTN KLDKQPDDPT  1020
HTIPVVGVYS VDPWQLKAKA EVDTRKGPWL YFCPEPGKEG SSRSTPSGYW KAQAGPSRRI  1080
IYSTGGLPIG VKNTMVFHYS SAESATKTGW IMDEFTAFHN EGGGTTIPKP RSDISLCRLY  1140
TTQGPSALCS TEGSSSEWPI RRGMVPRMEG ALEDPKQCEK GTTTEGKGII ESVLLAGENA  1200
NKNAHKSRKR RATESRLGGS RQLVRKVMTS CDPNADGLSG SWRMYGQKYI DVDSRWPRSY  1260
YRCTHRPTHD CPATRTVQQR RCTGDGTPMY EVLDYGEHTC PVQHQQQLPS HSDDDRGSGI  1320
SAALQQPGAA DTGAAVHVTT TTSVSGSASP ASSPPAGNT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j5t_C	1e-37	63	799	59	779	Disease resistance RPP13-like protein 4
6j5t_F	1e-37	63	799	59	779	Disease resistance RPP13-like protein 4
6j5t_G	1e-37	63	799	59	779	Disease resistance RPP13-like protein 4
6j5t_L	1e-37	63	799	59	779	Disease resistance RPP13-like protein 4
6j5t_O	1e-37	63	799	59	779	Disease resistance RPP13-like protein 4
6j5u_A	1e-37	63	799	59	779	Disease resistance RPP13-like protein 4
6j5v_A	1e-37	63	799	59	779	Disease resistance RPP13-like protein 4
6j5w_A	1e-37	63	799	59	779	Disease resistance RPP13-like protein 4
6j6i_C	1e-37	63	799	59	779	Disease resistance RPP13-like protein 4
6j6i_F	1e-37	63	799	59	779	Disease resistance RPP13-like protein 4
6j6i_G	1e-37	63	799	59	779	Disease resistance RPP13-like protein 4
6j6i_L	1e-37	63	799	59	779	Disease resistance RPP13-like protein 4
6j6i_O	1e-37	63	799	59	779	Disease resistance RPP13-like protein 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	109	RRRRRT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN541034.1_FGP003

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615335.1	0.0	disease resistance protein RGA5-like isoform X1
Refseq	XP_015615336.1	0.0	disease resistance protein RGA5-like isoform X1
TrEMBL	A0A0D3HQ12	0.0	A0A0D3HQ12_9ORYZ; Uncharacterized protein
STRING	OBART11G23060.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2751	19	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	4e-24	NAC domain containing protein 90