PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541000.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 348aa    MW: 38808.7 Da    PI: 9.233
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541000.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.42.4e-082432742354
                        SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        ryps  ++  LA+++gL+ +qV +WF N R +
  KN541000.1_FGP001 243 RYPSDVDKHILARQTGLSRSQVANWFINARVR 274
                        8*****************************88 PP
2BELL94.87.5e-3195165272
               BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         +elq+ k kL ++leeVd+rY++y+eq++++++sFeavag  +a+ Yt+lA+++iSrhFr+L+d ++ q+
  KN541000.1_FGP001  95 AAELQRLKGKLYTMLEEVDRRYRRYCEQMRALAASFEAVAGERAAAAYTRLASRTISRHFRSLRDGVVAQL 165
                        5799****************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.8E-3235163IPR006563POX domain
PfamPF075263.7E-3745161IPR006563POX domain
SMARTSM003897.4E-8213282IPR001356Homeobox domain
CDDcd000861.46E-9213279No hitNo description
SuperFamilySSF466896.42E-14214285IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.6E-24216284IPR009057Homeodomain-like
PfamPF059201.2E-13230274IPR008422Homeobox KN domain
PROSITE profilePS5007110.77231278IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MAHDPSLGYA DYFAAEVDGA GATELYGLQQ QHQQQGVGVA EMFGQLLQEF CSLPVKSTTS  60
PSSASKATKP PQEEAAGGGG SSSWTAPTQI QSMDAAELQR LKGKLYTMLE EVDRRYRRYC  120
EQMRALAASF EAVAGERAAA AYTRLASRTI SRHFRSLRDG VVAQLQAVRK QLGEKDTAVP  180
GMTKGETPRL RVLDQCLRQH KAYQAGMLES HPWRPQRGLP ERAVSILRAW LFEHFLHPIV  240
RFRYPSDVDK HILARQTGLS RSQVANWFIN ARVRLWKPMV EEMYAEEMKD EEGSGQSTQA  300
SNPQNPNPSS YTSEVRGGGG EDRGEQKPSR AQLLHDAVAI RHLVARWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A1e-13219282563Homeobox protein Meis2
4xrm_B1e-13219282563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541000.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680290.0AK068029.1 Oryza sativa Japonica Group cDNA clone:J013134A07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614125.10.0BEL1-like homeodomain protein 4
SwissprotQ388976e-83BEL1_ARATH; Homeobox protein BEL1 homolog
SwissprotQ9SW808e-83BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A0E0R1T50.0A0A0E0R1T5_ORYRU; Uncharacterized protein
TrEMBLQ8LN250.0Q8LN25_ORYSJ; Associated with HOX family protein, expressed
STRINGORUFI10G17910.10.0(Oryza rufipogon)
STRINGOS10T0534900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.15e-71TALE family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  4. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]