PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540986.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 447aa    MW: 49712.5 Da    PI: 4.6586
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540986.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.72.5e-35171092103
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++++el+ +isw + gnsfvv+d++ fa++vLp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h+ F +++k+l
  KN540986.1_FGP001  17 FLSKTYDLVSEPELDGVISWGHAGNSFVVWDPSAFARDVLPHHFKHNNFSSFVRQLNTYGFRKVHADR---------WEFAHEDFLRHSKHL 99 
                        9****************************************************************999.........*************** PP

                        XXXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkkse 103
                        l+ki r++s+
  KN540986.1_FGP001 100 LKKIVRRRSS 109
                        ******9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.2E-3313106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.1E-5613106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.2E-3813106IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.1E-3117106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-171740IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-175567IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405680IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-176880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MPLPLEALLQ GPQLPPFLSK TYDLVSEPEL DGVISWGHAG NSFVVWDPSA FARDVLPHHF  60
KHNNFSSFVR QLNTYGFRKV HADRWEFAHE DFLRHSKHLL KKIVRRRSSP TQQSGLQPGS  120
SGESGLDPEL NTLRREKSAL LQEVTRLKQE HLQTIEQMST LNQRLESAED RQKQMVSFLA  180
KLLQNPTFLR QLKMHRQQKE IDSTRVKRKF LKHIPHGNID SGESSSQHTG ESNLDFSLTS  240
LDLPATHGDI SDLQNFLLED GDLNLAMLPE NIGLDGIEAP DDIGALVQGF DTQEELELGS  300
GVELLEMPTA SGPHGQDPTI GRSKGKNVLS PGLDATSSEV DCLGSFSDNM GVLSDSMLQT  360
EGKLMDADDD ERIWGVDASS ALQSSCSGTS QQAYGSLVSD PYLMEMANKP EKFWELDFQA  420
LDDGDLQLDK CVIDDPALQQ QRGNMNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-25110612129Heat shock factor protein 1
5d5v_B2e-25110612129Heat shock factor protein 1
5d5v_D2e-25110612129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540986.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1019340.0AK101934.1 Oryza sativa Japonica Group cDNA clone:J033073P11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623061.10.0heat stress transcription factor A-3
SwissprotQ6H6Q70.0HSFA3_ORYSJ; Heat stress transcription factor A-3
TrEMBLA0A0E0NFR60.0A0A0E0NFR6_ORYRU; Uncharacterized protein
STRINGORUFI02G19790.10.0(Oryza rufipogon)
STRINGOS02T0527300-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90103041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.16e-72heat shock transcription factor A3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]