PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540971.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 277aa    MW: 29269.2 Da    PI: 9.9463
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540971.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.6e-31204262259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +D y+WrKYGqK++kgs++pr+YYrC+s+ +Cp++k+ver+++dp ++ +tYe+eHnh 
  KN540971.1_FGP003 204 SDNYSWRKYGQKPIKGSPHPRGYYRCSSKkDCPARKHVERCRSDPAMLLVTYENEHNHA 262
                        69**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.7E-13162201IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.0E-33194264IPR003657WRKY domain
PROSITE profilePS5081131.031198264IPR003657WRKY domain
SuperFamilySSF1182903.92E-27201264IPR003657WRKY domain
SMARTSM007742.7E-37203263IPR003657WRKY domain
PfamPF031061.2E-26205261IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAAVESSKKL VAILSKSGDP FRLMAAVAET DEAVSSRGAP APAASMAAAA KNSSKLAPAP  60
MVNSSSSANH IQFQQPMKSF QFEQKPISDK FHIEMPRSGG VVGVGGGGGK EVISFSFDNS  120
VCTSSAATSF FTSISSQLIS MSDAATNSAA AAAPTKKPPS SCARKAAADD DAGGKCHCPK  180
KKKPREKKVV TVPAISDKVA DIPSDNYSWR KYGQKPIKGS PHPRGYYRCS SKKDCPARKH  240
VERCRSDPAM LLVTYENEHN HAQPLDISLV QQATANP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-202012641274WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540971.1_FGP003
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8352020.0CT835202.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA207H14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629206.11e-126protein WRKY1 isoform X2
SwissprotO043361e-48WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A0D9ZEG71e-141A0A0D9ZEG7_9ORYZ; Uncharacterized protein
STRINGOGLUM03G37240.31e-142(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127053036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.15e-39WRKY DNA-binding protein 11