PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540714.1_FGP003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GeBP | ||||||||
Protein Properties | Length: 256aa MW: 28251.5 Da PI: 10.4662 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 51 | 4.1e-16 | 2 | 58 | 42 | 97 |
DUF573 42 kksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskkiWg 97 ++++++ +sksqlveK+rrLK+K++++v++ + sg+ +sf+++h+q ife+++ iW+ KN540714.1_FGP003 2 RGRLQLGFSKSQLVEKLRRLKRKYRNCVSRlRGSGSAFSFRSPHEQAIFEIARNIWR 58 678999************************8889**********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 4.4E-15 | 2 | 57 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MRGRLQLGFS KSQLVEKLRR LKRKYRNCVS RLRGSGSAFS FRSPHEQAIF EIARNIWRPT 60 NKHGRDGDSD DDDATPVTPA PIPVNTSPNG EVKSPTSGRQ RRRRRGGDFA AAAPATAPAT 120 TNMVQPIQPV QVPVSVPVKM DDTLPALSQT TMPITVTMEG SEPLRLPVMP PQPAVLDADK 180 SCLTPLFKEM VHAVINIGSN PFGAQLPEPP HGLPMEGEKW RKQRILELEV YLKRIELLQD 240 QVKATLEELK SSAPGT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540714.1_FGP003 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003749 | 0.0 | AP003749.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1136_D11. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 0.0 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645065.1 | 1e-151 | probable transcription factor At5g28040 | ||||
TrEMBL | A0A0E0EEY0 | 1e-158 | A0A0E0EEY0_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM07G23550.1 | 1e-154 | (Oryza glumipatula) | ||||
STRING | ONIVA07G23260.1 | 1e-154 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 3e-18 | DNA-binding storekeeper protein-related transcriptional regulator |