PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540594.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 173aa MW: 18258.3 Da PI: 6.7161 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 51.8 | 1.8e-16 | 43 | 74 | 21 | 55 |
G2-like 21 LGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 LGG AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ KN540594.1_FGP001 43 LGG---ATPKSVLELMDVKDLTLAHVKSHLQMYRT 74 555...9***************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.23E-6 | 40 | 75 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.2E-12 | 42 | 74 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.1E-14 | 45 | 75 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MHPRRFLQAK VRVPLTRVRG PPAAFTHPCK DAVPSDVARI FALGGATPKS VLELMDVKDL 60 TLAHVKSHLQ MYRTVKSTDK PAASSGPADG GSGDEEFAGG GGQAASGGGD SMDPWLSSNS 120 CNMDAHRSVG LSSPIENLEP CRSSSSQVSN HELSSPSLEF TLGRPDWHGA DHD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540594.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ268748 | 2e-98 | FJ268748.1 Oryza sativa Japonica Group rolled leaf 9 (RL9) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015696540.1 | 1e-70 | PREDICTED: probable transcription factor RL9 | ||||
Swissprot | Q0J235 | 2e-64 | ROLL9_ORYSJ; Probable transcription factor RL9 | ||||
TrEMBL | A0A0D3H6I6 | 2e-74 | A0A0D3H6I6_9ORYZ; Uncharacterized protein | ||||
STRING | OBART09G09230.1 | 3e-75 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2558 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16560.1 | 1e-19 | G2-like family protein |