PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540575.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRF
Protein Properties Length: 428aa    MW: 45472.5 Da    PI: 9.0032
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540575.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.11.5e-23125169145
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                        d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e 
  KN540575.1_FGP004 125 DSEPGRCRRTDGKKWRCSRDAVVDQKYCERHINRGRHRSRKHVEG 169
                        689***************************************986 PP
2QLQ58.61.9e-205490137
                QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                       ++FT++Q+++L++Q+l+yK+++an+PvP+ Ll++i++
  KN540575.1_FGP004 54 GPFTPTQWMELEHQALIYKHIVANAPVPAGLLLPIRR 90
                       59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.3E-115490IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.8E-155589IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.8365590IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.527125169IPR014977WRC domain
PfamPF088799.3E-20127168IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MATPTTNGSF LLGSGGYPGA QILSFSSSGH SGNGLDCGSS DVTRMQGVLA RVRGPFTPTQ  60
WMELEHQALI YKHIVANAPV PAGLLLPIRR SLHPPVFPHF SSGGILGSSS LGWGSFQLGY  120
SGSADSEPGR CRRTDGKKWR CSRDAVVDQK YCERHINRGR HRSRKHVEGQ SSHAAKATVP  180
TIAQPPIGAS NGKLSGSHGV SNELTKTLAT NRMMSDKANL IERSQDYTNQ QHNILQNNTK  240
GDNWSEEMSS QADYAVIPAG SLMNTPQSAN LNPIPQQQRC KQSLFGKGIQ HDDIQLSISI  300
PVDNSDLPTN YNKAQMDNVV GGSSNGGNNT RASWIPGSWE ASIGGPLGEF FTNTSSASDD  360
KGKSRHPPSL NLLADGHTTS PQLQSPTGVL QMTSFSSVPS STVSSPAGSL CNGLLTSGLV  420
NAQTVQTL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540575.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2415570.0AK241557.1 Oryza sativa Japonica Group cDNA, clone: J065178H17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618984.10.0growth-regulating factor 7 isoform X1
SwissprotQ6AWY20.0GRF7_ORYSJ; Growth-regulating factor 7
TrEMBLA0A0E0BSS90.0A0A0E0BSS9_9ORYZ; Uncharacterized protein
STRINGOGLUM12G13820.20.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129602731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.11e-43growth-regulating factor 2