PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540541.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 633aa    MW: 68496.7 Da    PI: 6.3225
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540541.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.7e-16487530146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        r ++++eEd+ll++++++lG++ W++Ia +++ gRt+k++ ++w++
  KN540541.1_FGP003 487 RRSFSKEEDDLLLKLHALLGNR-WSLIAGRLP-GRTDKEVMNHWNS 530
                        6789******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF118055.0E-113172449IPR021763Protein of unknown function DUF3326
SuperFamilySSF466891.48E-13481535IPR009057Homeodomain-like
PROSITE profilePS5129421.947482536IPR017930Myb domain
SMARTSM007175.1E-15486534IPR001005SANT/Myb domain
PfamPF002491.2E-14487530IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-19489532IPR009057Homeodomain-like
CDDcd001672.22E-5507532No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MHHLRILLHD DLHHRISPIT PTVLLTKVLL NDGHLRPLLR HNENPRVRHH HTTIAAATVT  60
EHDVHRVVGH TYPLRHVHDH DILRANGVEV EEEVLVGESR GGGESGGRTV PDVARREVRE  120
GGDVGARGGG EDAIGEVDVG GVGGGGRRDG GGLPGGERDG EGAEVGDVGE AVLNAAMLYW  180
PMPNTLYVEG YALDRFAEGS WALQPVHQNK VGLVLDSGIE EELRLRHLQV ADAARASLGL  240
PVVEYIVTDT PLEIKTWFDP KCGKSTGSVG NSDSLLRAVE ALVNRSDVNA VAVVARFPDD  300
DPEDSDCYRE GKGVDLLAGV EAIISHLIVK KFKIPAAHAP AVLPPVLSPS VSPRSAAEEI  360
GHTFLPCVLA GLSNAPQYVM RRNGNMDNGC IVASDVDSVI LPKDACGGDG TIAFARTARK  420
NKPLIITVQE NETVLDDTPD KFNIEAVSTR GRSSASLQVS SQPPPRLISE HLPAGDPPSP  480
LSRSRKRRSF SKEEDDLLLK LHALLGNRWS LIAGRLPGRT DKEVMNHWNS KLMDSTTDHP  540
PSLHHRRRRR RLRSEAHDER GAKHLGHNSS SSSSKDANGD ECTVADDASS CNHQDDNRGV  600
AELNLELTLS TPCIYLLLGQ DREDGSKSNQ GLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144151GGRRDGGG
2483488SRKRRS
3545552RRRRRRLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540541.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0688460.0AK068846.1 Oryza sativa Japonica Group cDNA clone:J013162I04, full insert sequence.
GenBankAP0028600.0AP002860.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0409B08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0FFP20.0A0A0E0FFP2_ORYNI; Uncharacterized protein
STRINGONIVA01G01950.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1077288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.12e-09myb domain protein 82