PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540251.1_FGP004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 155aa MW: 16898.4 Da PI: 10.4628 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32 | 2.7e-10 | 36 | 73 | 13 | 50 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 13 NReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 NR +A+rsR RK+++i eLe+ v +L+ e +aL ++ KN540251.1_FGP004 36 NRQSAQRSRVRKLQYISELERSVTTLQMEVSALSPRVA 73 ****************************9999987665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.5E-4 | 28 | 88 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 3.52E-17 | 33 | 79 | No hit | No description |
SuperFamily | SSF57959 | 8.44E-10 | 34 | 82 | No hit | No description |
Pfam | PF00170 | 3.6E-8 | 35 | 78 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.0E-12 | 36 | 82 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MAQLPPRAPS AAAAAAAGQE WSAMAAAGEF LGILANRQSA QRSRVRKLQY ISELERSVTT 60 LQMEVSALSP RVAFLDHQRS LLTVGNSHLK QRIAALAQDK IFKDAHQEAL KKEIERLRQV 120 YHQQQIKATG GADIATAASM QAKHELLVCE GAAMR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540251.1_FGP004 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By white light. {ECO:0000269|PubMed:18065552}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP096247 | 1e-126 | FP096247.1 Phyllostachys edulis cDNA clone: bphyst038a13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622790.1 | 5e-81 | basic leucine zipper 19 | ||||
Swissprot | Q6K3R9 | 4e-82 | BZP19_ORYSJ; Basic leucine zipper 19 | ||||
TrEMBL | A0A0D9YPV4 | 1e-79 | A0A0D9YPV4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0CII7 | 1e-79 | A0A0E0CII7_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0JXY8 | 7e-80 | A0A0E0JXY8_ORYPU; Uncharacterized protein | ||||
TrEMBL | A0A0E0NCD7 | 9e-80 | A0A0E0NCD7_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2X2Y2 | 1e-79 | A2X2Y2_ORYSI; Uncharacterized protein | ||||
STRING | OGLUM02G10470.1 | 2e-80 | (Oryza glumipatula) | ||||
STRING | OMERI02G11280.1 | 2e-80 | (Oryza meridionalis) | ||||
STRING | ORUFI02G10470.1 | 1e-80 | (Oryza rufipogon) | ||||
STRING | ONIVA02G11660.1 | 2e-80 | (Oryza nivara) | ||||
STRING | OPUNC02G09400.1 | 1e-80 | (Oryza punctata) | ||||
STRING | ORGLA02G0094900.1 | 2e-80 | (Oryza glaberrima) | ||||
STRING | OBART02G10550.1 | 2e-80 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1322 | 38 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58120.1 | 1e-53 | bZIP family protein |