PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN540176.1_FGP005

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 967aa MW: 106606 Da PI: 4.4237

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN540176.1_FGP005	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	44.1	6.4e-14	364	409	84	128
NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +atgkd+++++ +g +vg kktLv+++grap+ge+tdWvmhey+l KN540176.1_FGP005 364 QATGKDRSICNGgGGGAVGSKKTLVYHHGRAPRGERTDWVMHEYTL 409 79******9877889*************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.287.110	2.8E-14	2	92	IPR001623	DnaJ domain
SuperFamily	SSF46565	4.71E-17	3	101	IPR001623	DnaJ domain
SMART	SM00271	5.9E-6	5	63	IPR001623	DnaJ domain
PROSITE profile	PS50076	13.404	6	71	IPR001623	DnaJ domain
CDD	cd06257	1.25E-9	7	60	IPR001623	DnaJ domain
Pfam	PF00226	5.6E-11	7	68	IPR001623	DnaJ domain
PRINTS	PR00625	5.3E-10	8	26	IPR001623	DnaJ domain
PRINTS	PR00625	5.3E-10	43	63	IPR001623	DnaJ domain
PRINTS	PR00625	5.3E-10	63	82	IPR001623	DnaJ domain
Pfam	PF14308	7.7E-47	133	321	IPR026894	DNAJ-containing protein, X-domain
PROSITE profile	PS51005	15.113	280	432	IPR003441	NAC domain
SuperFamily	SSF101941	2.62E-16	364	432	IPR003441	NAC domain
Pfam	PF02365	1.1E-4	375	409	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 967 aa Download sequence Send to blast
MVRETGYYDV LGVSPTATEV EIKKAYYMKA RKGDHAFVLP HVALGCFKNE LGEAYQVLSD 60 PTQRQAYDSY GKSGISTEAI IDPAAIFAML FGSELFEDYI GQLAMASMAS LDIFGDEEEI 120 DARVLQEKMR VVQKEREEKL AETLKNKLHL YVQGNKEEFV QFAEAEVSRL SNAAYGVDML 180 STIGYVYSRQ AAKELGKKAI YLGVPFIAEW FRNKGHYIKS QVTAATGAIA LMQLQEDLKK 240 HLSAECHYTE EELEAYMETH KSVMVDSLWK LNVADIEGTL SHVCQMVLQD STIRREELRA 300 RAKGLKTLGK IFQRVKLGSS EGDVTTINNT INNSDGNDGS SPDSSPMSPR EHPYDPNPPY 360 YQFQATGKDR SICNGGGGGA VGSKKTLVYH HGRAPRGERT DWVMHEYTLL ADALPPAARD 420 REVYALYKLF HKSGAGPKNG EQYGAPFREE DWLDDDDDHD QLPTEAALPA PAATTSGIAA 480 TMEEHADFEL PGGDLDVLLA QIENDQDIIE AQLDFSTHVT SQVQIQHRVH QDWPSDDGGK 540 SDVADATTSG SALLMAENTC AELPIDGLEQ LLMQISDDQQ TVEMFSGFSA SVPQSQLQHD 600 DHQDCLGVHR EEVGVADSTT VSSAVVTEEC TVRELQDIEG LLMQIENDQE NAESLPDFST 660 PVHLHDCHQA AFGDFQGSQR ATFNIANLST MVQESPNFDL QTGPSNQITE SILTTEPMNG 720 ETNAVEETSA LRSMSVLGSY DRQGGDDEFL EINDFFDPED LEQILGSTTS QNLIPPDDGV 780 FDSLQYSDAP MFLPGSFDTT GVVAENHYVE FCASGIQNQG FQHTTELWAH NQVALNVRNH 840 MKDNYVVFSH SSDASIIHTV NEQPPNRSSN ASQSWFNGAL SALLDSVPSS PAMAAENIGL 900 NRTLQRISSF RSQQSAREEV STTVIHTRRR GSGLIFISLM VLLVAIMWTS SNGSVVKLSK 960 GLWKFST

Sequence ? help Back to Top

Protein Sequence Length: 967 aa Download sequence Send to blast

MVRETGYYDV LGVSPTATEV EIKKAYYMKA RKGDHAFVLP HVALGCFKNE LGEAYQVLSD  60
PTQRQAYDSY GKSGISTEAI IDPAAIFAML FGSELFEDYI GQLAMASMAS LDIFGDEEEI  120
DARVLQEKMR VVQKEREEKL AETLKNKLHL YVQGNKEEFV QFAEAEVSRL SNAAYGVDML  180
STIGYVYSRQ AAKELGKKAI YLGVPFIAEW FRNKGHYIKS QVTAATGAIA LMQLQEDLKK  240
HLSAECHYTE EELEAYMETH KSVMVDSLWK LNVADIEGTL SHVCQMVLQD STIRREELRA  300
RAKGLKTLGK IFQRVKLGSS EGDVTTINNT INNSDGNDGS SPDSSPMSPR EHPYDPNPPY  360
YQFQATGKDR SICNGGGGGA VGSKKTLVYH HGRAPRGERT DWVMHEYTLL ADALPPAARD  420
REVYALYKLF HKSGAGPKNG EQYGAPFREE DWLDDDDDHD QLPTEAALPA PAATTSGIAA  480
TMEEHADFEL PGGDLDVLLA QIENDQDIIE AQLDFSTHVT SQVQIQHRVH QDWPSDDGGK  540
SDVADATTSG SALLMAENTC AELPIDGLEQ LLMQISDDQQ TVEMFSGFSA SVPQSQLQHD  600
DHQDCLGVHR EEVGVADSTT VSSAVVTEEC TVRELQDIEG LLMQIENDQE NAESLPDFST  660
PVHLHDCHQA AFGDFQGSQR ATFNIANLST MVQESPNFDL QTGPSNQITE SILTTEPMNG  720
ETNAVEETSA LRSMSVLGSY DRQGGDDEFL EINDFFDPED LEQILGSTTS QNLIPPDDGV  780
FDSLQYSDAP MFLPGSFDTT GVVAENHYVE FCASGIQNQG FQHTTELWAH NQVALNVRNH  840
MKDNYVVFSH SSDASIIHTV NEQPPNRSSN ASQSWFNGAL SALLDSVPSS PAMAAENIGL  900
NRTLQRISSF RSQQSAREEV STTVIHTRRR GSGLIFISLM VLLVAIMWTS SNGSVVKLSK  960
GLWKFST

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN540176.1_FGP005

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068501	0.0	AK068501.1 Oryza sativa Japonica Group cDNA clone:J013155B08, full insert sequence.
GenBank	AK099237	0.0	AK099237.1 Oryza sativa Japonica Group cDNA clone:J013112C23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611740.1	0.0	NAC domain-containing protein 17 isoform X1
TrEMBL	A0A0D3H8F6	0.0	A0A0D3H8F6_9ORYZ; Uncharacterized protein
STRING	OBART09G15000.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9128	28	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34190.1	1e-27	NAC domain containing protein 17