PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540155.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 655aa    MW: 73440.6 Da    PI: 7.3426
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540155.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.5e-09407453753
                        --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
           Homeobox   7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                        + +  +e+L ++F++n  p ++ +e L+++lg++ +++  WF+N R 
  KN540155.1_FGP004 407 IPPAAVEVLRKAFAENELPARSVKENLSTELGISFEKIDKWFKNTRL 453
                        567789***************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-12388452IPR009057Homeodomain-like
SuperFamilySSF466892.65E-9396454IPR009057Homeodomain-like
PROSITE profilePS5007111.92398454IPR001356Homeobox domain
SMARTSM003892.4E-4400462IPR001356Homeobox domain
CDDcd000866.32E-8401452No hitNo description
PfamPF000466.9E-7406453IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MNTPEKKPLC YTSRRALQQR TESSSELISV SKRATRQSTS RKPDSPPKRT TRSSANLAKC  60
IENKHHSNPL KQRRGSDAAT GKSATGSTRR KHKQKRKNDE SDEVSRMEKR ARYLLLKIKQ  120
EQNLLDAYSG DGWNGHSREK IKPEKELQRA KKQIMKYKIA IRDVIHQLDL RSSSGSKDDS  180
VIPPDGCHES VNPEHVFLPT TRHGRLCKYC SSKMKILDAI NAHLGTTFTV KCPSSDIFKE  240
AAEHFNSDDG LGQDWLSEYS GDEDYDPEEN EASSSGEENK SADSNCSGSP LYSPNDDIPD  300
FISADFNDAE GFCRESSNLG IDFGEDGLAE ILTHQRPRRD VDYTQLNEQM FGEPIGNEEQ  360
SEDEDWGLSR RKKRRTGSTG VGTNSVEGRS DAKSNKKAQP RRKLFRIPPA AVEVLRKAFA  420
ENELPARSVK ENLSTELGIS FEKIDKWFKN TRLQSVIFKF LATSHIYQPR VFGESRYSGP  480
SKRSRTSIEK VETSAKVDQM DNSCFLPLSE IINVPTRLQK GLDKKPKSTN SPPRPQDNET  540
CLSPTDKTKE DTPPTIKPSI ADSSQLMNNN IGTEETAVSW VDTWASDALH FLDVSDDEHF  600
FDVIEKVCGL ENRLQRLKEN MLSSSSSTDN NVAAESGLQN EVVLVPAAEL KDKAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540155.1_FGP004
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0652570.0AK065257.1 Oryza sativa Japonica Group cDNA clone:J013002J16, full insert sequence.
GenBankAK0705020.0AK070502.1 Oryza sativa Japonica Group cDNA clone:J023051F17, full insert sequence.
GenBankAK0988550.0AK098855.1 Oryza sativa Japonica Group cDNA clone:J013000I05, full insert sequence.
GenBankFJ9402070.0FJ940207.1 Oryza sativa Japonica Group clone KCS002D03 homeodomain protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626817.10.0pathogenesis-related homeodomain protein isoform X1
TrEMBLI1NX880.0I1NX88_ORYGL; Uncharacterized protein
STRINGORGLA02G0034400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85502227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.23e-59pathogenesis related homeodomain protein A