PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN540155.1_FGP001

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GATA

Protein Properties

Length: 3185aa MW: 356720 Da PI: 4.5765

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN540155.1_FGP001	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	48.3	1.3e-15	2896	2933	1	36
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 C++Cg + Tp++Rrgpdg++tLCnaCGl+++ kg++ KN540155.1_FGP001 2896 CHHCGISAasTPMMRRGPDGPRTLCNACGLMWANKGTM 2933 ***88888***********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57997	5.1E-6	2211	2412	No hit	No description
Gene3D	G3DSA:2.30.110.10	4.4E-27	2615	2725	IPR012349	FMN-binding split barrel
Pfam	PF01243	4.1E-6	2616	2683	IPR011576	Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain
SuperFamily	SSF50475	3.09E-18	2617	2783	IPR012349	FMN-binding split barrel
PROSITE profile	PS51017	13.384	2821	2863	IPR010402	CCT domain
Pfam	PF06203	8.3E-15	2821	2863	IPR010402	CCT domain
PROSITE profile	PS50114	9.249	2890	2938	IPR000679	Zinc finger, GATA-type
SMART	SM00401	2.2E-12	2890	2943	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	8.55E-11	2894	2946	No hit	No description
CDD	cd00202	5.92E-13	2895	2939	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.9E-14	2895	2936	IPR013088	Zinc finger, NHR/GATA-type
PROSITE pattern	PS00344	0	2896	2923	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	1.8E-13	2896	2933	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0055114	Biological Process	oxidation-reduction process
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0004733	Molecular Function	pyridoxamine-phosphate oxidase activity
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0010181	Molecular Function	FMN binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 3185 aa Download sequence Send to blast
MGVQLQQFRK KKEKRGPGKK AEAKADAAEA EEGSSKSGVD AEEAVPEPKS PVGLKLLAGE 60 GGASHRTPFE EAARSQVEQC NGQGPDTAES CVVDNSDVLP VQEGGDGGGN AQDVGVSEHG 120 SLEHVNPGTD DGEGATIPVT GADGSGLLIE GAQPVEMDVD EKLPDNSLKE NMELCTSSQG 180 AIADDNGDSQ AEEHQQVEMY PVERPTSSDS KEITDIIGHS QDIGAGNTNK GEGRARETEI 240 DVSGMPSGAV VECEGELNVR ASHEASESTS REDTDKEADA LGEEAAVQED PGVANATEGV 300 VMVDDLSLHA KSIGAVSLPP HKEIDQALLA SDISQDMAPY HLEDIQRHLY LATMSRDFLQ 360 LQMDESADLN TDGTPESSNE VINLQVLLEE TEKSKLAVCE ELQQCRHELS DMNTVKEELE 420 LTVASLKDRI NTSNNKCEHL EFELQSSKEN TQQILNELSG CRAMLEALQK ENLELTATLT 480 FEKEARKEVE EQREHLCSEN KRVLSNLSDL ELSLASLKEE MNDGSNRCAD LECELRSTKE 540 NMERTLVELA SCRNSLETLQ NDNLELSANS SFEKEAIKKL EEDNLCLSNE KQGLLLDLSE 600 TKEELHLSYA KHEHLESHAR DMETYFGQLT EQLIEENIYT STSVDIYQTI TKELYAKCNV 660 VLGEARNAHQ DNEACLDSSE IIVENVERET TSPELIGHDD NQRPLLVAEN DSCNSTALQS 720 LKGHLKVAKG DLRDLQKLVE RISSRSDGRV LVSKLIQSFE SKGNQEDLGM SEGEHDNLRK 780 LTQEMICRLV EKLKAMTSDI AKTEEYVAEL CNRIELSVKF MSQHEAEIEH TAVLVAKMDG 840 FAGKLSNYKD TIDQLVSQVA NVHQDADNHA GRLIDQAELL QNDVTERIST LEKERTSLTD 900 VLMEVTDKLS ALSKNALPSD LGGSEGLGSL ALSSVECAAK LVQNLQEKLE DAQTDNAELN 960 ASLVELKTAH SDVQERSKHA HGIVKKMYIS LQELLFNSLG NPDESGVEFN AEEPIEALFS 1020 QYGDIIEHLK SLLHERQYLL SKNTDLESRL LSKCEETEAL SSSLTKNMND FSLLNEELKS 1080 VSISRIEAQD ELHGRCLAIA EKMVHRSTSH SSTVLSSMEM SSKANHILTT LLPCIEEGVA 1140 SYIEEFENMA EEIRLSKICL QESNIIGQSS SENWSVSLPV LIKEEIVPIF FDLQGRIDQL 1200 STLNIQLETE VPVLRDGLTK LDSALETSRA ELQKKVFELE QSEQKLSSVK EKLSIAVAKG 1260 KGLIVQRDSL KQTLLEKSGE LEKLAHELQS KDSLLIELEA KIKSYADADR IEALESELSY 1320 IRNSATALRD SFLQKDSVLQ RIEEVLEDLD LPENFHFRDI VEKIELLSKM AVGASFTVPD 1380 GNKQSSVDGN SESGAAIDSI NDEQNSNSNS GAEEIKIKYD ELHRRFYELA EHNNMLEQSL 1440 VERNNLIQKW EEVLGQISIP QQFRMLEPED RIAWLGNRLL EVEHERDALH LKIEHLEDSS 1500 EMLISDLEES HKRISELSAE IVAVKAEKEF FSQSLEKLRF DFLGLSEKAV QDEYVRDNLR 1560 KDLAELQEKL AEKTEESKLY HDMEMEINKL MDLVRDALQD DSNTEIPSGA GVGAAVLCLG 1620 SLLSRLIDGY KTHLSESTVR SSAEMETLSE TKISKDASTS ERGMEEKEMA LNTLSGELEH 1680 TRNSLALLEQ QRDEAVEKTQ SLTIELETLR AQIDQLQGDG AEQMNRYQSL MLELESMTKQ 1740 RDDLQEKLGQ EEQKCTSLRE KLNVAVRKGK GLVQHRDSLK QTMEEMNTMI EKLKVERKQH 1800 IESLESERSS LMGRLAENEK SLHDATQYLS RLLNSLSTVD IGREFDTDPI TKVENFSKFC 1860 LDLQNEVKKS KQATELLLAE LNEVHERADN LQDELVKAEA ALSESFKQNS VVESARADAV 1920 RHLERIMHMQ SQTKRKQIDH LMELNSTSSQ LREIFSELLH HLLNTFSKDV DIINYMESFV 1980 KSSDKWMDST SMVEIPITSN HHLSNSISSK TCSSQMAHIP NVPLEITLDN ADETQILHHL 2040 ATACHAVADC VNDCNDIKSR IHEHGFSVDQ KAADLFNVMS NLQNKFTSQN NELESLRENI 2100 IELQSEIKQR DEEILSMRRN LSLLYEACTS SVAEIEGMTG IESGDHSCSV VQNHLSADDH 2160 IKSVVNQLVA AIKTTQNSNE GNTKELKATV LELQQELQEK HIQISTISAE LASQVREAES 2220 SAKQLSVELA NARMEIHNLE KHSEMLLNQK KNLETQVSEL KDMEAVAHDQ HGRIKDLSDE 2280 LSKKDQEIEG LMQALDEEER ELEVLENKSN DLEKMLQEKE FALKSLEVSR TKALTKLATT 2340 VDKFDELHSL SESLLAEVEN LQSQLQERDS EISFLRQEIT RSTNELLTTE ESNKKYSSQI 2400 NDFTKWLETA LLQFSVHCDS TNDYECTQVP VYMDMLEKKI GSLISESDEL RVTLQSKDSL 2460 LQAERTRMEE LLRKSEVLES SLSQKDSQIG LLRRDRTSGQ PSRFINLPGT SEIEQVNEKV 2520 SPAAVVTQIR GARKVNTDQV AIDVEVEKDK PLDDEDDDKA HGFKSLTMSR IVPKFTRPIS 2580 DRIDGMCCSD LLWRVTDSLM QILLVIMRNL ENCKAKKEGY PFGSLVDFAP DPMGHPIFSL 2640 SPLAIHTRNL LEDPRCTVVV QVPGWSGLSN ARVTIFGDVV PLPADLQVLV DFVNGNSDLK 2700 VNLFFFRNGL INSFGTVAWL DVKEYEALKP DKIATDGGEQ SLKELNAMYS KPLKELLSTE 2760 IEVDDAALIS IDSKGIDIRV RQGAQVQAVL LLLGGRELAP GSGSVPSSSA AYSKKMNFPH 2820 RMASLMRFRE KRKERNFDKK IRYTVRKEVA LRMQRNRGQF TSSKSKAEEA TSAITSSEGS 2880 PNWGAVEGRP PSAAECHHCG ISAASTPMMR RGPDGPRTLC NACGLMWANK GTMREVTKGP 2940 PVPLQIVPAS TNDVGYKDAL VEAQALRVNC SSESERRQAL ESHVADLKSD NERLRRLYTE 3000 TLFKFTNQMK FHTESRNLKE ELEKANTRLL SMEEEYKREI EQLKLGSEMN SNDLENKLSC 3060 ALVQQATNEA VIKQLNLELE AHKAHIDMLS SRLEQVTAAV HQQYKNEIQD LKDVVIVEQE 3120 EKNDMHRKLQ NTENELRIMK MKQAEQQRDS ISVQHVETLK QKVMKLRKEN ESLKRRLATS 3180 ELDCS

Sequence ? help Back to Top

Protein Sequence Length: 3185 aa Download sequence Send to blast

MGVQLQQFRK KKEKRGPGKK AEAKADAAEA EEGSSKSGVD AEEAVPEPKS PVGLKLLAGE  60
GGASHRTPFE EAARSQVEQC NGQGPDTAES CVVDNSDVLP VQEGGDGGGN AQDVGVSEHG  120
SLEHVNPGTD DGEGATIPVT GADGSGLLIE GAQPVEMDVD EKLPDNSLKE NMELCTSSQG  180
AIADDNGDSQ AEEHQQVEMY PVERPTSSDS KEITDIIGHS QDIGAGNTNK GEGRARETEI  240
DVSGMPSGAV VECEGELNVR ASHEASESTS REDTDKEADA LGEEAAVQED PGVANATEGV  300
VMVDDLSLHA KSIGAVSLPP HKEIDQALLA SDISQDMAPY HLEDIQRHLY LATMSRDFLQ  360
LQMDESADLN TDGTPESSNE VINLQVLLEE TEKSKLAVCE ELQQCRHELS DMNTVKEELE  420
LTVASLKDRI NTSNNKCEHL EFELQSSKEN TQQILNELSG CRAMLEALQK ENLELTATLT  480
FEKEARKEVE EQREHLCSEN KRVLSNLSDL ELSLASLKEE MNDGSNRCAD LECELRSTKE  540
NMERTLVELA SCRNSLETLQ NDNLELSANS SFEKEAIKKL EEDNLCLSNE KQGLLLDLSE  600
TKEELHLSYA KHEHLESHAR DMETYFGQLT EQLIEENIYT STSVDIYQTI TKELYAKCNV  660
VLGEARNAHQ DNEACLDSSE IIVENVERET TSPELIGHDD NQRPLLVAEN DSCNSTALQS  720
LKGHLKVAKG DLRDLQKLVE RISSRSDGRV LVSKLIQSFE SKGNQEDLGM SEGEHDNLRK  780
LTQEMICRLV EKLKAMTSDI AKTEEYVAEL CNRIELSVKF MSQHEAEIEH TAVLVAKMDG  840
FAGKLSNYKD TIDQLVSQVA NVHQDADNHA GRLIDQAELL QNDVTERIST LEKERTSLTD  900
VLMEVTDKLS ALSKNALPSD LGGSEGLGSL ALSSVECAAK LVQNLQEKLE DAQTDNAELN  960
ASLVELKTAH SDVQERSKHA HGIVKKMYIS LQELLFNSLG NPDESGVEFN AEEPIEALFS  1020
QYGDIIEHLK SLLHERQYLL SKNTDLESRL LSKCEETEAL SSSLTKNMND FSLLNEELKS  1080
VSISRIEAQD ELHGRCLAIA EKMVHRSTSH SSTVLSSMEM SSKANHILTT LLPCIEEGVA  1140
SYIEEFENMA EEIRLSKICL QESNIIGQSS SENWSVSLPV LIKEEIVPIF FDLQGRIDQL  1200
STLNIQLETE VPVLRDGLTK LDSALETSRA ELQKKVFELE QSEQKLSSVK EKLSIAVAKG  1260
KGLIVQRDSL KQTLLEKSGE LEKLAHELQS KDSLLIELEA KIKSYADADR IEALESELSY  1320
IRNSATALRD SFLQKDSVLQ RIEEVLEDLD LPENFHFRDI VEKIELLSKM AVGASFTVPD  1380
GNKQSSVDGN SESGAAIDSI NDEQNSNSNS GAEEIKIKYD ELHRRFYELA EHNNMLEQSL  1440
VERNNLIQKW EEVLGQISIP QQFRMLEPED RIAWLGNRLL EVEHERDALH LKIEHLEDSS  1500
EMLISDLEES HKRISELSAE IVAVKAEKEF FSQSLEKLRF DFLGLSEKAV QDEYVRDNLR  1560
KDLAELQEKL AEKTEESKLY HDMEMEINKL MDLVRDALQD DSNTEIPSGA GVGAAVLCLG  1620
SLLSRLIDGY KTHLSESTVR SSAEMETLSE TKISKDASTS ERGMEEKEMA LNTLSGELEH  1680
TRNSLALLEQ QRDEAVEKTQ SLTIELETLR AQIDQLQGDG AEQMNRYQSL MLELESMTKQ  1740
RDDLQEKLGQ EEQKCTSLRE KLNVAVRKGK GLVQHRDSLK QTMEEMNTMI EKLKVERKQH  1800
IESLESERSS LMGRLAENEK SLHDATQYLS RLLNSLSTVD IGREFDTDPI TKVENFSKFC  1860
LDLQNEVKKS KQATELLLAE LNEVHERADN LQDELVKAEA ALSESFKQNS VVESARADAV  1920
RHLERIMHMQ SQTKRKQIDH LMELNSTSSQ LREIFSELLH HLLNTFSKDV DIINYMESFV  1980
KSSDKWMDST SMVEIPITSN HHLSNSISSK TCSSQMAHIP NVPLEITLDN ADETQILHHL  2040
ATACHAVADC VNDCNDIKSR IHEHGFSVDQ KAADLFNVMS NLQNKFTSQN NELESLRENI  2100
IELQSEIKQR DEEILSMRRN LSLLYEACTS SVAEIEGMTG IESGDHSCSV VQNHLSADDH  2160
IKSVVNQLVA AIKTTQNSNE GNTKELKATV LELQQELQEK HIQISTISAE LASQVREAES  2220
SAKQLSVELA NARMEIHNLE KHSEMLLNQK KNLETQVSEL KDMEAVAHDQ HGRIKDLSDE  2280
LSKKDQEIEG LMQALDEEER ELEVLENKSN DLEKMLQEKE FALKSLEVSR TKALTKLATT  2340
VDKFDELHSL SESLLAEVEN LQSQLQERDS EISFLRQEIT RSTNELLTTE ESNKKYSSQI  2400
NDFTKWLETA LLQFSVHCDS TNDYECTQVP VYMDMLEKKI GSLISESDEL RVTLQSKDSL  2460
LQAERTRMEE LLRKSEVLES SLSQKDSQIG LLRRDRTSGQ PSRFINLPGT SEIEQVNEKV  2520
SPAAVVTQIR GARKVNTDQV AIDVEVEKDK PLDDEDDDKA HGFKSLTMSR IVPKFTRPIS  2580
DRIDGMCCSD LLWRVTDSLM QILLVIMRNL ENCKAKKEGY PFGSLVDFAP DPMGHPIFSL  2640
SPLAIHTRNL LEDPRCTVVV QVPGWSGLSN ARVTIFGDVV PLPADLQVLV DFVNGNSDLK  2700
VNLFFFRNGL INSFGTVAWL DVKEYEALKP DKIATDGGEQ SLKELNAMYS KPLKELLSTE  2760
IEVDDAALIS IDSKGIDIRV RQGAQVQAVL LLLGGRELAP GSGSVPSSSA AYSKKMNFPH  2820
RMASLMRFRE KRKERNFDKK IRYTVRKEVA LRMQRNRGQF TSSKSKAEEA TSAITSSEGS  2880
PNWGAVEGRP PSAAECHHCG ISAASTPMMR RGPDGPRTLC NACGLMWANK GTMREVTKGP  2940
PVPLQIVPAS TNDVGYKDAL VEAQALRVNC SSESERRQAL ESHVADLKSD NERLRRLYTE  3000
TLFKFTNQMK FHTESRNLKE ELEKANTRLL SMEEEYKREI EQLKLGSEMN SNDLENKLSC  3060
ALVQQATNEA VIKQLNLELE AHKAHIDMLS SRLEQVTAAV HQQYKNEIQD LKDVVIVEQE  3120
EKNDMHRKLQ NTENELRIMK MKQAEQQRDS ISVQHVETLK QKVMKLRKEN ESLKRRLATS  3180
ELDCS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	13	RKKKEK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN540155.1_FGP001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005191	0.0	AP005191.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0479D12.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624718.1	0.0	golgin subfamily A member 4
TrEMBL	A0A0E0N9U9	0.0	A0A0E0N9U9_ORYRU; Uncharacterized protein
STRING	ORUFI02G03810.1	0.0	(Oryza rufipogon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21175.1	7e-47	ZIM-like 1