PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540113.1_FGP003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 243aa MW: 27498.6 Da PI: 8.7663 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 53.5 | 4.7e-17 | 99 | 160 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 +Dg++WrKYG K++ +sef + YYrC ++ +C++kk v++++ + p + +t ++eH+++ KN540113.1_FGP003 99 NDGFHWRKYGEKNILNSEFRKLYYRCGYSderKCRAKKYVQQENnKHPPEFRVTLTNEHTCN 160 7**************************998899*******98761578899********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 1.22E-18 | 92 | 160 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.2E-19 | 93 | 160 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-26 | 98 | 161 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 12.622 | 99 | 162 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.5E-20 | 99 | 159 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MARRLPKSER SPSPPPPPPP GDQRDAAIQE LSKGSELATQ LMAQLELIPE RGARRPPRRR 60 AGQPTSVSGA GGARKTKRRR GKHGEELIET VFITTTPEND GFHWRKYGEK NILNSEFRKL 120 YYRCGYSDER KCRAKKYVQQ ENNKHPPEFR VTLTNEHTCN TLFQDQPSSS STNSQVLDFT 180 KASISSPLMD SHVSAPILKE EEEEEVPSID ESSRIMSTIM RNYGSYGDYD ESSPQSWNGA 240 GWQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 57 | 79 | RRRAGQPTSVSGAGGARKTKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540113.1_FGP003 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT836407 | 0.0 | CT836407.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA113F18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638351.1 | 1e-141 | probable WRKY transcription factor 63 | ||||
TrEMBL | A0A0E0DT28 | 1e-141 | A0A0E0DT28_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI05G17320.1 | 1e-142 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9993 | 29 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66600.1 | 2e-14 | ABA overly sensitive mutant 3 |