PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540097.1_FGP004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 186aa MW: 20063.9 Da PI: 4.4647 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 55.1 | 1.5e-17 | 54 | 109 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 DgynWr GqK v+g + + YY C++a+C + k v rsa d+++ +++ +g+Hnh+ KN540097.1_FGP004 54 DGYNWRICGQKLVQGGCHQKFYYECSQANCGAEKSVTRSA-DGQIKKTVCKGSHNHP 109 9***************************************.***************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 2.75E-17 | 50 | 110 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.4E-15 | 52 | 110 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.5E-10 | 52 | 110 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-15 | 54 | 109 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 14.079 | 54 | 111 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MADQRFRSWL TEQLNMQQQN AGCSSNPAPA VMQMPALPSH TDYGGIYPNP TEYDGYNWRI 60 CGQKLVQGGC HQKFYYECSQ ANCGAEKSVT RSADGQIKKT VCKGSHNHPR SSERVFGDGS 120 ATLDAIPVGE ILQAAGVIRP SVAMPRNEEE DELQSGSSDS EEDDDSEARA DGDGAAGDAN 180 AIRCSI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540097.1_FGP004 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005416 | 0.0 | AP005416.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0094P23. | |||
GenBank | AP005499 | 0.0 | AP005499.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0412D08. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649132.1 | 1e-110 | zinc finger BED domain-containing protein RICESLEEPER 1-like | ||||
Refseq | XP_015649133.1 | 1e-110 | zinc finger BED domain-containing protein RICESLEEPER 1-like | ||||
TrEMBL | A0A0D3GX91 | 1e-128 | A0A0D3GX91_9ORYZ; Uncharacterized protein | ||||
STRING | OBART08G05640.1 | 1e-129 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14032 | 10 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01080.1 | 2e-16 | WRKY DNA-binding protein 58 |