PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539998.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 653aa    MW: 70803.5 Da    PI: 8.1249
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539998.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.75.1e-33253309259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +DgynWrKYGqK+vk+se+prsYY+Ct+++C+vkkkvers+ d++++ei+Y+g+Hnh+
  KN539998.1_FGP005 253 EDGYNWRKYGQKQVKNSEHPRSYYKCTFTNCTVKKKVERSQ-DGQITEIVYKGSHNHP 309
                        8****************************************.***************7 PP
2WRKY104.74.9e-33464522159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+vers++d k v++tYeg+Hnhe
  KN539998.1_FGP005 464 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHQGCSVRKHVERSSHDLKSVITTYEGKHNHE 522
                        59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-29248311IPR003657WRKY domain
SuperFamilySSF1182901.7E-26250311IPR003657WRKY domain
SMARTSM007745.5E-37252310IPR003657WRKY domain
PfamPF031062.4E-25253309IPR003657WRKY domain
PROSITE profilePS5081123.181253311IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.4E-37449524IPR003657WRKY domain
SuperFamilySSF1182903.92E-29456524IPR003657WRKY domain
PROSITE profilePS5081137.941459524IPR003657WRKY domain
SMARTSM007741.4E-38464523IPR003657WRKY domain
PfamPF031062.6E-25465522IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MSSFLNEEFS SGPFSDIFGD NGSNRHQDGL GKSKAFIDSS REETAQLAKK FESNLFGANQ  60
KSSSNGCLSE RMAARTGFGV LKIDTSRVGY STPIRSPVTI PPGVSPRELL ESPVFLPNAI  120
AQPSPTTGKL PFLMHSNVKP SIPKKTEDET RHDRVFFFQP ILGSKPPTCP VAEKGFSVNH  180
QNQPSVTDNH QELSLQSSST AAKDFTSATI VKPKTSDSML DNDDHPSPAN DQEENATNKN  240
EEYSSDLIIT PAEDGYNWRK YGQKQVKNSE HPRSYYKCTF TNCTVKKKVE RSQDGQITEI  300
VYKGSHNHPL PPSNRRPNVP FSHFNDLKDD HSEKFGSKSG QATATSWENA ANGHLQDVGS  360
EVLTKLSASL TTTEHAEKSV MDKQEAVDIS STLSNEEDDR VTHRAPLSLG FDANDDDVEH  420
KRRKMDVCAA TSTSTNTIDI GAVASRAVRE PRFVVQTTSE VDILDDGYRW RKYGQKVVKG  480
NPNPRSYYKC THQGCSVRKH VERSSHDLKS VITTYEGKHN HEVPAARNSG HPSSGSAAAP  540
QATNGLLHRR PEPAQGGGGG SLAQFGYGSA GHRPAEQFGA AAAAAGSSFG MLPRSIATPA  600
PSPAIAVPAM QGYPGLVLPR GEMKVNLLPQ SGNAGAAASQ QLMGRLPKQH PQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-35253525878Probable WRKY transcription factor 4
2lex_A2e-35253525878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539998.1_FGP005
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0655180.0AK065518.1 Oryza sativa Japonica Group cDNA clone:J013025I24, full insert sequence.
GenBankAY8706100.0AY870610.1 Oryza sativa (japonica cultivar-group) WRKY30 mRNA, complete cds.
GenBankCT8288680.0CT828868.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI209L14, full insert sequence.
GenBankCT8288690.0CT828869.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI216M15, full insert sequence.
GenBankDQ2981800.0DQ298180.1 Oryza sativa (japonica cultivar-group) WRKY transcription factor 30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650158.10.0probable WRKY transcription factor 2
RefseqXP_015650159.10.0probable WRKY transcription factor 2
RefseqXP_015650160.10.0probable WRKY transcription factor 2
RefseqXP_015650162.10.0probable WRKY transcription factor 2
RefseqXP_015650163.10.0probable WRKY transcription factor 2
RefseqXP_015650164.10.0probable WRKY transcription factor 2
RefseqXP_015650165.10.0probable WRKY transcription factor 2
RefseqXP_025883130.10.0probable WRKY transcription factor 2
RefseqXP_025883131.10.0probable WRKY transcription factor 2
TrEMBLI1QJV00.0I1QJV0_ORYGL; Uncharacterized protein
STRINGORGLA08G0170100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-110WRKY DNA-binding protein 2