PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539974.1_FGP003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 171aa MW: 19256.7 Da PI: 4.9324 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 132.3 | 5.3e-41 | 19 | 168 | 159 | 311 |
GRAS 159 eetgerLakfAeelgv.pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249 ++ g+ L+ +Ae lg+ +ef++ v ++le+l++e+L ++ +Ea+a+n+vl+lh +++es + +vL++++ lsP+ +v+veq+a hn KN539974.1_FGP003 19 RASGRELEAYAEGLGMmYLEFRT-VDRSLESLHIEDLGIDADEAVAINSVLELHPVVKESRGALN---SVLQTIRILSPRAFVLVEQDAGHN 106 677999********97269****.799******************************88877777...8*********************** PP GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhet 311 ++ Fl rf+eal+yy++lfd+l+a++pr + r+ vE++ +g ei+nvv ega+r+erhe KN539974.1_FGP003 107 GPFFLGRFMEALQYYATLFDALDAEIPRYDARRARVEQFHFGTEIRNVVGWEGAARVERHEC 168 ************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 25.629 | 1 | 171 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.8E-38 | 19 | 168 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MGLDRGHRWR GLLDGLAARA SGRELEAYAE GLGMMYLEFR TVDRSLESLH IEDLGIDADE 60 AVAINSVLEL HPVVKESRGA LNSVLQTIRI LSPRAFVLVE QDAGHNGPFF LGRFMEALQY 120 YATLFDALDA EIPRYDARRA RVEQFHFGTE IRNVVGWEGA ARVERHECAD Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 6e-19 | 1 | 165 | 116 | 307 | GRAS family transcription factor containing protein, expressed |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539974.1_FGP003 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003791 | 0.0 | AP003791.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1065G12. | |||
GenBank | AP006757 | 0.0 | AP006757.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0551C06. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814052.1 | 7e-95 | DELLA protein RGL1-like | ||||
TrEMBL | A0A0D3EXI7 | 1e-113 | A0A0D3EXI7_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G40850.1 | 1e-114 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5640 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 6e-26 | RGA-like 1 |