PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539960.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 609aa    MW: 67671.9 Da    PI: 8.3471
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539960.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.00014445488654
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++  ++R +++ +++  L++l+ +      +K + a++L +A  +I++L
  KN539960.1_FGP002 445 KATCKKRSQKLGDRITALQQLVSPY-----GKTDTASVLHEAAACIRQL 488
                        56669******************99.....9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.702439488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-5445494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-8449494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MSRVQLRPPF LDTNSFLTQD LDEFLLNEFA ALSAAAGASD DDDDGEDGEG EGSDGEVISG  60
RARRRRTLAR EEAKLEKEIV RLVLAGEAEE ALKPNSGQSV AVGAHHICVG FHDDSGGEYR  120
VWEWHGHVMI FDDEDGYSAE YIYGNHFEPL AAATARAKKK EKEKREKELS SGLRDLIVGD  180
AGSGANGSKE NGKGGAPRVV RRNVVNAPAA PARSLISDSS GAISQMHRLF RLQKQQLCTW  240
IRHDDLDMLT DELERKRYRT LILMADTFLA NDLRQFPSAK RKSFSLYVNT CKHFHLDVEG  300
VETCRLLVSS VAVKCEASNS PSTTVGFDRM IAADYDLFHH MSFSPSLQNL QSPTFFTTRS  360
SESYLGESSI YGGGARPALA QFSYSQPIAA TSAAHLVRWT AAGEPMTGDG GFRSSKRLKT  420
ATTATTQSPR HGVKCHAKPR NQTTKATCKK RSQKLGDRIT ALQQLVSPYG KTDTASVLHE  480
AAACIRQLHQ QIQDAGGGGG TATELRRRGL NCNSIQFNYE VFGEVEEEET RRCTRRKKRK  540
PHTPTSTRVV LFLFSSLLPP YNKTPTEDWQ GLVDYGKKKN EFEWKRKLDG GFRIRTWNDN  600
LEGIHCMRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539960.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1370690.0AC137069.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009C19, from chromosome 3, complete sequence.
GenBankAK0610800.0AK061080.1 Oryza sativa Japonica Group cDNA clone:006-206-F02, full insert sequence.
GenBankAK0710430.0AK071043.1 Oryza sativa Japonica Group cDNA clone:J023079J04, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0CYU60.0A0A0E0CYU6_9ORYZ; Uncharacterized protein
STRINGOMERI03G11900.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37582426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05170.13e-14bHLH family protein