PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539944.1_FGP005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 160aa MW: 18036.2 Da PI: 10.7283 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 42.7 | 1.2e-13 | 49 | 102 | 9 | 62 |
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 9 rkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 r+ +NR++A+ R+RKka++ Le kvk Le++N++L ++ ++l++e + l++ KN539944.1_FGP005 49 RLLRNRVSAQQARERKKAYLNDLEVKVKDLEKKNSELEERFSTLQNENQMLRQI 102 999**********************************************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.0E-11 | 41 | 105 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.75E-13 | 48 | 103 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.3E-16 | 48 | 105 | No hit | No description |
PROSITE profile | PS50217 | 11.415 | 48 | 106 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 8.5E-12 | 49 | 103 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 49 | 63 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14704 | 2.57E-14 | 49 | 97 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MLHASSKDER RGQSGEAEAE ASGGVHANPS SPARMQEQAT SSRPSSSERL LRNRVSAQQA 60 RERKKAYLND LEVKVKDLEK KNSELEERFS TLQNENQMLR QILKNTTKGS IMHNQKVMLL 120 ARKIAIKAPN NKEINLQEQQ QANGQAMDRR NQAPPVSFTN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2oqq_A | 2e-14 | 66 | 105 | 3 | 42 | Transcription factor HY5 |
2oqq_B | 2e-14 | 66 | 105 | 3 | 42 | Transcription factor HY5 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539944.1_FGP005 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT833768 | 1e-93 | CT833768.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA034A06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623711.1 | 9e-33 | transcription factor HY5 | ||||
TrEMBL | A0A218XR05 | 1e-31 | A0A218XR05_PUNGR; Uncharacterized protein | ||||
TrEMBL | A0A2I0IT23 | 1e-31 | A0A2I0IT23_PUNGR; Uncharacterized protein | ||||
STRING | OS02T0203000-00 | 4e-32 | (Oryza sativa) | ||||
STRING | OB02G17160.1 | 3e-32 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1408 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11260.1 | 3e-25 | bZIP family protein |