PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539882.1_FGP006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 229aa MW: 25966.4 Da PI: 8.4224 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 128.2 | 6.3e-40 | 39 | 152 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pGfrFhPtdeel+++yL++kv++k+l++ e+ike+diyk++PwdLp +++ ++ekewyfF+ r +ky+++ r+nr+t sg + KN539882.1_FGP006 39 LPGFRFHPTDEELITFYLRRKVARKSLSI-EIIKEMDIYKHDPWDLPkASTVGGEKEWYFFCLRGRKYRNSIRPNRVTGSG------N---- 119 69***************************.89***************445556889********************98865......2.... PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ge +glkk+Lv+y+g+a kg+ktdW+mhe+rl KN539882.1_FGP006 120 ---SGESIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 152 ...5778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.5E-45 | 37 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.046 | 38 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-21 | 40 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MVTSKEFARD QAAMDQKIKS DVGEVVLAGD EEEDGDVVLP GFRFHPTDEE LITFYLRRKV 60 ARKSLSIEII KEMDIYKHDP WDLPKASTVG GEKEWYFFCL RGRKYRNSIR PNRVTGSGNS 120 GESIGLKKSL VYYRGSAGKG TKTDWMMHEF RLPPAIAAAD ASPCMQEAVY IGNYCQWLNK 180 SWLRRIAVTL VTYSRINSKH PRGDQLDYYQ AGVQDNHGSG QPEFVASLT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-40 | 40 | 152 | 19 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-40 | 40 | 152 | 19 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-40 | 40 | 152 | 19 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-40 | 40 | 152 | 19 | 142 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-40 | 40 | 152 | 22 | 145 | NAC domain-containing protein 19 |
3swm_B | 7e-40 | 40 | 152 | 22 | 145 | NAC domain-containing protein 19 |
3swm_C | 7e-40 | 40 | 152 | 22 | 145 | NAC domain-containing protein 19 |
3swm_D | 7e-40 | 40 | 152 | 22 | 145 | NAC domain-containing protein 19 |
3swp_A | 7e-40 | 40 | 152 | 22 | 145 | NAC domain-containing protein 19 |
3swp_B | 7e-40 | 40 | 152 | 22 | 145 | NAC domain-containing protein 19 |
3swp_C | 7e-40 | 40 | 152 | 22 | 145 | NAC domain-containing protein 19 |
3swp_D | 7e-40 | 40 | 152 | 22 | 145 | NAC domain-containing protein 19 |
4dul_A | 8e-40 | 40 | 152 | 19 | 142 | NAC domain-containing protein 19 |
4dul_B | 8e-40 | 40 | 152 | 19 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539882.1_FGP006 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073539 | 0.0 | AK073539.1 Oryza sativa Japonica Group cDNA clone:J033041C24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628846.1 | 1e-114 | transcription factor JUNGBRUNNEN 1 | ||||
Swissprot | Q9SK55 | 4e-64 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A0D3FPQ2 | 1e-114 | A0A0D3FPQ2_9ORYZ; Uncharacterized protein | ||||
STRING | OBART03G36060.1 | 1e-115 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 2e-66 | NAC domain containing protein 42 |