PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539724.1_FGP010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 129aa MW: 14372.1 Da PI: 8.5067 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.1 | 6.4e-05 | 27 | 49 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H KN539724.1_FGP010 27 YPCGFCRREFRSAQALGGHMNVH 49 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.74E-6 | 24 | 53 | No hit | No description |
PROSITE profile | PS50157 | 10.741 | 27 | 54 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 29 | 49 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MNNNSSGSSR REEAYWRQQQ LILQRSYPCG FCRREFRSAQ ALGGHMNVHR RDRARLRLRL 60 SLTQQPPQPA DDAAKSTPPL LPNLNYPPPP PPPHDGASSS APPHLPRLPA DDDADADAGL 120 DLELRLAFC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539724.1_FGP010 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 8e-85 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624301.1 | 1e-41 | transcriptional regulator SUPERMAN | ||||
TrEMBL | A0A0D3EZF7 | 1e-41 | A0A0D3EZF7_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9YKY2 | 2e-41 | A0A0D9YKY2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1NW98 | 1e-41 | I1NW98_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM02G00100.1 | 3e-42 | (Oryza glumipatula) | ||||
STRING | ORGLA02G0000400.1 | 2e-42 | (Oryza glaberrima) | ||||
STRING | OBART02G00100.1 | 2e-42 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4667 | 30 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 4e-11 | C2H2 family protein |