PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539607.1_FGP002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 169aa MW: 19190.5 Da PI: 6.2473 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 39.1 | 1.6e-12 | 74 | 123 | 5 | 57 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 ++ rr+ +NRe+ArrsR RK+++++eL v eL N++ el+ +++ KN539607.1_FGP002 74 RKKRRLVSNRESARRSRVRKQKRLDELSSQVSELRDTNQRILVELN---HMIS 123 78899*********************************97765554...4444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.2E-9 | 69 | 121 | No hit | No description |
SMART | SM00338 | 3.0E-8 | 70 | 134 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.887 | 72 | 135 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.7E-9 | 74 | 120 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.77E-10 | 74 | 125 | No hit | No description |
CDD | cd14702 | 6.77E-13 | 75 | 119 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 77 | 92 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MQHDAISNIA YHPSMDFTSF FLPQTDAYSH DLSALLDMAV VDPYISCNGS SITMIPVTED 60 EANAQPKNHG NDERKKRRLV SNRESARRSR VRKQKRLDEL SSQVSELRDT NQRILVELNH 120 MISKHARIVR ENSQLREEAS DLQRKLSEME MEDAEVAAAA AAPRTLEVA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 73 | 94 | RKKRRLVSNRESARRSRVRKQK |
2 | 86 | 92 | RRSRVRK |
3 | 86 | 93 | RRSRVRKQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00389 | DAP | Transfer from AT3G30530 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539607.1_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005785 | 0.0 | AP005785.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0453H10. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | BT129347 | 0.0 | BT129347.1 Oryza sativa clone RRlibA00066 mRNA sequence. | |||
GenBank | BT129389 | 0.0 | BT129389.1 Oryza sativa clone RRlibA00076 mRNA sequence. | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. | |||
GenBank | CT835362 | 0.0 | CT835362.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI022L05, full insert sequence. | |||
GenBank | CT835365 | 0.0 | CT835365.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI025K13, full insert sequence. | |||
GenBank | CU406913 | 0.0 | CU406913.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C002J11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624742.1 | 1e-104 | basic leucine zipper 43 | ||||
TrEMBL | A0A0D3F1V5 | 1e-118 | A0A0D3F1V5_9ORYZ; Uncharacterized protein | ||||
STRING | OBART02G06960.1 | 1e-119 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12742 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30530.1 | 2e-22 | basic leucine-zipper 42 |