PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539596.1_FGP004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 357aa MW: 40042 Da PI: 10.686 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.1 | 3.7e-14 | 117 | 199 | 13 | 97 |
TT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 13 sgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + ++ +p kf+++h + +++++ ++ + g+ W+v+l ++ + ++l++GW F a++L eg +++F+++g++ f +v vf KN539596.1_FGP004 117 LENMKIPEKFVQQHltETYTNNHQNAIIVCPLGKFWRVEL--QREQPDVLLRDGWAPFLAAHDLSEGNILLFRYEGNMVF--TVEVF 199 34489**********944445667899999**********..999999****************************9999..66665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.7E-20 | 103 | 204 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.83E-20 | 104 | 208 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.365 | 105 | 202 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.15E-15 | 106 | 199 | No hit | No description |
SMART | SM01019 | 1.8E-6 | 108 | 202 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-11 | 116 | 199 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.2E-10 | 279 | 354 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-8 | 280 | 354 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 7.754 | 313 | 357 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MTTRSATQSG RQRQGRRCGG REGTVSWSLG GTPSTARALG VPSTTRGLAR ARNRVALCGS 60 EQLKKDVVRR DTSAIFQAGT RRVFDPGFCL ARFCTPHAGM RTKDRPRFIK LLQQEDLENM 120 KIPEKFVQQH LTETYTNNHQ NAIIVCPLGK FWRVELQREQ PDVLLRDGWA PFLAAHDLSE 180 GNILLFRYEG NMVFTVEVFL QNGCLKEYKT AALYLTDGTE GPSNAPQQSA AKVGVSPVKR 240 KRTRRIEGTC LEGPNRKSRA SPISVKVEPQ KKHVSIVSQN SFTKEMTAYS IHSLLSVRGT 300 FCSQIGLLEA CAITLKISMK KKGSWRVAFK TANTYGYING PGWRKFCLEN ELEVQRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539596.1_FGP004 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004792 | 1e-176 | AP004792.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0505A04. | |||
GenBank | AP014962 | 1e-176 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642658.1 | 0.0 | putative B3 domain-containing protein Os06g0632500 isoform X1 | ||||
Swissprot | Q67VL7 | 0.0 | Y6325_ORYSJ; Putative B3 domain-containing protein Os06g0632500 | ||||
TrEMBL | A0A0E0AC58 | 0.0 | A0A0E0AC58_9ORYZ; Uncharacterized protein | ||||
STRING | OS06T0632500-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26680.1 | 3e-13 | B3 family protein |