PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539592.1_FGP003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 211aa MW: 23211.4 Da PI: 8.9822 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.7 | 1.8e-31 | 136 | 194 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s +prsY+rCt+++C+vkk+ver +d ++v++tYeg+H+h+ KN539592.1_FGP003 136 LDDGYKWRKYGQKVVKNSLHPRSYFRCTHSNCRVKKRVERLGTDCRMVITTYEGRHTHS 194 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.6E-33 | 121 | 194 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.62E-28 | 128 | 194 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.231 | 131 | 193 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.9E-37 | 136 | 195 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-24 | 137 | 193 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MPLPPPLQLP CHPKLLQMPF DQEDQPGIHG VMLSSDHCGL YPLPALPLSN SAAAAATVAL 60 GKHSAAAGSM PNIGGAEEVA TSVTKAGNES TTCNGSTTWW RGSTMAAAGE KGKMKIRRKM 120 REPRFCFQTR SEVDVLDDGY KWRKYGQKVV KNSLHPRSYF RCTHSNCRVK KRVERLGTDC 180 RMVITTYEGR HTHSPCDDNS SGEHTNCFSS F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-26 | 127 | 193 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 8e-26 | 127 | 193 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00618 | PBM | Transfer from AT2G44745 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539592.1_FGP003 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK072906 | 0.0 | AK072906.1 Oryza sativa Japonica Group cDNA clone:J023147K18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624962.1 | 1e-143 | probable WRKY transcription factor 12 | ||||
Swissprot | Q93WY4 | 2e-60 | WRK12_ARATH; Probable WRKY transcription factor 12 | ||||
TrEMBL | A0A0D3F8A8 | 1e-156 | A0A0D3F8A8_9ORYZ; Uncharacterized protein | ||||
STRING | OBART02G26230.1 | 1e-157 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1138 | 38 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44745.1 | 7e-62 | WRKY family protein |
Publications ? help Back to Top | |||
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