PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539590.1_FGP003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | FAR1 | ||||||||
Protein Properties | Length: 153aa MW: 17104.4 Da PI: 10.1927 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 38.2 | 4.8e-12 | 83 | 146 | 1 | 72 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek 72 +fY++YA ++GF+++ks++ k r+ +C++egk++++ ++ +++r+r+++++gCka +k+++++ KN539590.1_FGP003 83 NFYQRYACHAGFDIKKSRTLKA-------FREVCCTREGKHASKVTD-GDRQRRRPSKKMGCKAYVKLRRRR 146 6**************9998877.......7899**********9999.99999***************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.5E-7 | 83 | 146 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MSSCPPVTPR SSTGCAPASP PHQQCTPTRQ AGDSHSRWTP PCLDDNDIAT PTPNRVYSHG 60 PNVPPRMVPT EGMAFPTYDD AYNFYQRYAC HAGFDIKKSR TLKAFREVCC TREGKHASKV 120 TDGDRQRRRP SKKMGCKAYV KLRRRRHALI GGV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 128 | DRQRRR |
2 | 126 | 145 | RRRPSKKMGCKAYVKLRRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539590.1_FGP003 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012619 | 1e-115 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025882211.1 | 1e-36 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | Q6AU28 | 1e-78 | Q6AU28_ORYSJ; Putative FAR1 protein | ||||
STRING | ORGLA03G0393200.1 | 1e-45 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7609 | 10 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 3e-10 | FAR1-related sequence 6 |