PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539565.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 467aa    MW: 51577.6 Da    PI: 8.8567
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539565.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.81.7e-11181209533
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee 33 
                        k  rr+++NReAAr+sR+RKka+i++Le 
  KN539565.1_FGP004 181 KTLRRLAQNREAARKSRLRKKAYIQQLES 209
                        6789***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-5177239IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.795179221IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.06E-7181215No hitNo description
PfamPF001707.5E-9181210IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.3E-8182217No hitNo description
PROSITE patternPS000360184199IPR004827Basic-leucine zipper domain
PfamPF141446.9E-27266338IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MEPLTFEPTF SERYIWPARG DVHSVRRERS KESSSYDMAD FDQASLFLYL DSHDQQSIQE  60
QRQTLNIFPS QPMHVADPAH EAKSAGVAMA MLPNGNQLQV LPSHPSKKPD QQGGQKINSS  120
VPTNPPGPNL PLPNSAKDNK NSSLIKGPKK CGLQKEGSSS GKGATTSNDP EREGRRALDP  180
KTLRRLAQNR EAARKSRLRK KAYIQQLESS RIRLSQLEQQ VHVARVQGAM LGAGDQHQGL  240
PSGPSAASLF DVEYGRWVEE HSKLIFQLRA ALNEQMAENQ LQVFVNGAMA QHDELLSLKG  300
AIARADIFHL LCGVWATPAE RCFLWLGGFR PSEAIKVMLK QVEPLSEGQL MSIYELQQAA  360
KGTEDALSHA MDGLQQSLSD TVAAPDGAAA GGFMGHMSLA MNKISAMEDI VRQADGLRQQ  420
TLHKLQHMLT IRQAARCFVA ISDYFHRLRA LSTLWVARPR PEEGPAM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539565.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1069880.0AK106988.1 Oryza sativa Japonica Group cDNA clone:002-120-A05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651202.10.0transcription factor TGAL7 isoform X1
SwissprotQ6H4340.0TGAL7_ORYSJ; Transcription factor TGAL7
TrEMBLA0A0D3H4L00.0A0A0D3H4L0_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0QP170.0A0A0E0QP17_ORYRU; Uncharacterized protein
STRINGORUFI09G03940.10.0(Oryza rufipogon)
STRINGOBART09G03520.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27323669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-126bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]