PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539510.1_FGP008
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 246aa    MW: 25961.3 Da    PI: 6.9716
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539510.1_FGP008genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY100.24.5e-31271986170
              YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.........lleelkveeenlksnvek 88 
                          eq+Cyv+CnfC+tilav vP +slfk+vtvrCGhC++llsvnl+      aa+   +  + +          ll+e  + +   + ++e+
  KN539510.1_FGP008  27 EQEQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPFGQAllsptsphgLLDEVPSFQAPASLMTEQ 118
                        579*******************************************9986555555545555555556678888555554443333333333 PP

              YABBY  89 eesastsvssekl...senedeevprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                         + + +s++s++    ++    +++ + +  + r P++ + +Psa   +    i++i+            s+    WahfP+ihfgl
  KN539510.1_FGP008 119 ASPNVSSITSSNSscaNNAPATSMASAANkaTQREPQQPKNAPSANRTYSTVYINQIRIYS-------VSSLCMHQWAHFPHIHFGL 198
                        33222222222221221112222222221236799**************9999*9999764.......349999***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.2E-3227198IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MSSAPESFSL DHLSQHQQQQ QPPPLAEQEQ LCYVHCNFCD TILAVGVPCS SLFKTVTVRC  60
GHCANLLSVN LRGLLLPAAA STANQLPFGQ ALLSPTSPHG LLDEVPSFQA PASLMTEQAS  120
PNVSSITSSN SSCANNAPAT SMASAANKAT QREPQQPKNA PSANRTYSTV YINQIRIYSV  180
SSLCMHQWAH FPHIHFGLMP DQGLKKTGIQ SQDGAGECML FKDGLYAAAA AAAAATAASS  240
MGVTPF
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539510.1_FGP008
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740170.0AB274017.1 Oryza sativa Japonica Group OsYABBY5 mRNA for OsYABBY5 protein, complete cds.
GenBankAK0702050.0AK070205.1 Oryza sativa Japonica Group cDNA clone:J023042I23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634596.11e-133protein YABBY 5
SwissprotQ01JG21e-134YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF01e-134YAB5_ORYSJ; Protein YABBY 5
TrEMBLA0A0E0H3L61e-140A0A0E0H3L6_ORYNI; Uncharacterized protein
STRINGONIVA04G18220.11e-140(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-27YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]