PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539458.1_FGP005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 201aa MW: 23971.6 Da PI: 10.8072 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.4e-16 | 9 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd +l+ +v+q+G++ W++++++m+ ++R +k+c +rw +yl KN539458.1_FGP005 9 RQRWRPEEDAILLAYVRQYGPREWSLVSQRMNrpLHRDAKSCLERWKNYL 58 89**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 32.8 | 1.6e-10 | 64 | 100 | 1 | 39 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 +g+ T +E+ l +++ +++G++ Wk+Ia++++ gRt+k KN539458.1_FGP005 64 KGSLTDDEQRLVIRLQAKHGNK-WKKIAAEVP-GRTAKR 100 57789*****************.*********.***985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.191 | 1 | 62 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-13 | 8 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.21E-21 | 9 | 98 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-20 | 11 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.00E-8 | 11 | 58 | No hit | No description |
Pfam | PF13921 | 2.5E-14 | 12 | 73 | No hit | No description |
PROSITE profile | PS51294 | 11.86 | 63 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-5 | 63 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-14 | 66 | 99 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.91E-5 | 68 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008356 | Biological Process | asymmetric cell division | ||||
GO:0009615 | Biological Process | response to virus | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010338 | Biological Process | leaf formation | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045088 | Biological Process | regulation of innate immune response | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0000793 | Cellular Component | condensed chromosome | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MQPPPMRERQ RWRPEEDAIL LAYVRQYGPR EWSLVSQRMN RPLHRDAKSC LERWKNYLRP 60 GIKKGSLTDD EQRLVIRLQA KHGNKWKKIA AEVPGRTAKR LGKWEMEEGQ RAWAAHRKEA 120 AWRMKRVEMQ LETERACRRR EAAEEFEAKM RALREEQAAA VERVEAEYRE KMAGLRRDAE 180 AKEQKMAEQW AAKHARLAKN M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-16 | 12 | 97 | 7 | 89 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 5e-16 | 12 | 97 | 7 | 89 | C-Myb DNA-Binding Domain |
1msf_C | 5e-16 | 12 | 97 | 7 | 89 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for normal cell differentiation. May interact with other proteins to repress the knox homeobox genes (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539458.1_FGP005 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB064519 | 1e-167 | AB064519.1 Oryza sativa Japonica Group OsRS2 mRNA for transcription factor rough sheath 2 like protein, complete cds. | |||
GenBank | AB071600 | 1e-167 | AB071600.1 Oryza sativa Japonica Group gene for transcription factor OsRS2, complete cds, cultivar:Nipponbare. | |||
GenBank | AL772425 | 1e-167 | AL772425.7 Oryza sativa chromosome 12, . BAC OJ1396_C02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 1e-167 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620377.1 | 2e-69 | protein rough sheath 2 homolog | ||||
Swissprot | Q94IB1 | 1e-70 | RS2_ORYSJ; Protein rough sheath 2 homolog | ||||
TrEMBL | A0A151SW09 | 5e-73 | A0A151SW09_CAJCA; Transcription factor AS1 | ||||
STRING | OGLUM12G18010.1 | 3e-69 | (Oryza glumipatula) | ||||
STRING | ONIVA02G22170.1 | 3e-69 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5190 | 36 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37630.1 | 1e-57 | MYB family protein |