PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539403.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 363aa    MW: 41661.2 Da    PI: 6.9101
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539403.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.26.9e-2149147185
           trihelix   1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessst 78 
                        +Wt  +v++L+ a+ +++e++  +              ++k++W+ vs++m ergf +sp+qC++k+++lnkryk+++e+ +++t ++++++
  KN539403.1_FGP001  49 KWTSGMVKLLVSAVAYIDEDVDMDYgtgsaarrkhamlKRKGKWRLVSAAMTERGFPVSPQQCEDKFNDLNKRYKRMTEILGRGTaCQVVEH 140
                        7**************8888887543334467778888899*******************************************954888887 PP

           trihelix  79 cpyfdql 85 
                          +++ +
  KN539403.1_FGP001 141 PELLEGM 147
                        7776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-2047173No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MVPARGNPML DLGNVVKTSP SDEEDVDDGH HHGGGGGSGK EAGQWHRVKW TSGMVKLLVS  60
AVAYIDEDVD MDYGTGSAAR RKHAMLKRKG KWRLVSAAMT ERGFPVSPQQ CEDKFNDLNK  120
RYKRMTEILG RGTACQVVEH PELLEGMRLS GKLKEEARKH LNSKHLHYEE MCSYHNRNKM  180
CLLDDPTLQK SLRLALRSGE EHAKKNPFGY DDEYFSDDDD EDEEFDDLEV SAEDHHHGIH  240
GAKRLKHDQE ETHFGSNLSE VAVIDMNKML SEGSGGPTAE KSPSTPGMRD IRLEKRRLKI  300
KAQMLKIEQK HFKWLRFSKE KDRELEKMRL ENEKMKLENE RLELELKLKE IEMGIKPKKI  360
FSD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539403.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048770.0AP004877.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0472F10.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627648.10.0uncharacterized protein LOC4329598
TrEMBLA0A0D3F6500.0A0A0D3F650_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0HYL50.0A0A0E0HYL5_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NG470.0A0A0E0NG47_ORYRU; Uncharacterized protein
TrEMBLA2X5U20.0A2X5U2_ORYSI; Uncharacterized protein
TrEMBLQ6ESZ10.0Q6ESZ1_ORYSJ; Os02g0542400 protein
STRINGORUFI02G20760.10.0(Oryza rufipogon)
STRINGOS02T0542400-010.0(Oryza sativa)
STRINGONIVA07G07200.10.0(Oryza nivara)
STRINGOBART02G19680.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127742636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.18e-64sequence-specific DNA binding transcription factors