PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539393.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 218aa    MW: 24530.9 Da    PI: 6.1789
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539393.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.97.3e-11175214140
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 
                        r  WT+eE+ l+  + + +G g+Wk I++++ ++Rt+ q+
  KN539393.1_FGP007 175 RVVWTEEEHRLFMVGLRVFGRGDWKNISKHLVTTRTAAQL 214
                        678**********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.23E-9172213IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-8172214IPR009057Homeodomain-like
PROSITE profilePS5129311.568173218IPR017884SANT domain
TIGRFAMsTIGR015579.4E-8173213IPR006447Myb domain, plants
PfamPF002492.2E-8175214IPR001005SANT/Myb domain
CDDcd001674.74E-7178216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MGSIVIEGWT ASEIEEARSL ITSPNNGGEG GDGEGNKQKH CGHIVMELHE WFPWKTIGQV  60
IGLYMKLNAG KPMVMHYLNK SDANNSIGEV DHVSNLANGN PVRLEEHRPM LNNVGLVFDY  120
PLEEMEMENQ TDQEPKMVVE EEVQPKEGLV IKEKEAGVSK IHTNSQHVTP SIKRRVVWTE  180
EEHRLFMVGL RVFGRGDWKN ISKHLVTTRT AAQLIKAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539393.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0028540.0AP002854.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0014B15.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642214.11e-154uncharacterized protein LOC107281238
TrEMBLA0A0E0HPY91e-153A0A0E0HPY9_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PU551e-153A0A0E0PU55_ORYRU; Uncharacterized protein
TrEMBLA2Y9V81e-153A2Y9V8_ORYSI; Uncharacterized protein
TrEMBLQ5SNB91e-153Q5SNB9_ORYSJ; Uncharacterized protein OSJNBa0014B15.24
STRINGORUFI06G04910.11e-153(Oryza rufipogon)
STRINGONIVA06G15050.11e-153(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165491112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.14e-13MYB_related family protein