PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539344.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRF | ||||||||
Protein Properties | Length: 381aa MW: 42043.6 Da PI: 9.2503 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 72.1 | 6.5e-23 | 131 | 174 | 2 | 45 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ep+rCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e KN539344.1_FGP001 131 VEPRRCRRTDGKKWRCSRDAVGDQKYCERHINRGRHRSRKHVEG 174 59***************************************996 PP | |||||||
2 | QLQ | 58.3 | 2.3e-20 | 78 | 114 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK++aan+ vP+ Ll++i++ KN539344.1_FGP001 78 GPFTPTQWMELEHQALIYKHIAANVSVPSSLLLPIRR 114 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 5.4E-12 | 78 | 114 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.0E-14 | 79 | 113 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.888 | 79 | 114 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.136 | 130 | 174 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.2E-19 | 132 | 173 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MAMEIQEACK KNIMADVVSS KVEEEEEGKS KSKMGSWKPY TTCSWASLAS GLFALLDFSR 60 LGLSSGGSMQ GVLARVRGPF TPTQWMELEH QALIYKHIAA NVSVPSSLLL PIRRSLHPWG 120 WGSFPPGCAD VEPRRCRRTD GKKWRCSRDA VGDQKYCERH INRGRHRSRK HVEGRKATLT 180 IAEPSMVIAA GVSSRGHTVV RQKQVKGSAA TVSDPFSRQS NRKFLEKQNV VDQLSPMDSF 240 DFSSTQSSPN YDNVALSPLK LHHDHDESYI GHGAGSSSEK GSMMHENRLT VSKETLDDGP 300 LGEVFKRKNC QSASTEILTE KWTENPNLHC PSGILQMATK FNSISSGNTV NSGGTAVENL 360 ITDNGYLTAR MMNPHIVPTL L |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539344.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK103055 | 0.0 | AK103055.1 Oryza sativa Japonica Group cDNA clone:J033117J15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615703.1 | 0.0 | growth-regulating factor 8 | ||||
Swissprot | Q6AWY1 | 0.0 | GRF8_ORYSJ; Growth-regulating factor 8 | ||||
TrEMBL | A2ZFA1 | 0.0 | A2ZFA1_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA11G16660.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12960 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 6e-38 | growth-regulating factor 2 |
Publications ? help Back to Top | |||
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