PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539341.1_FGP003

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 255aa MW: 28340.5 Da PI: 6.1416

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539341.1_FGP003	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.3	1.1e-30	18	71	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+eLH++Fveave LGG+++AtPk+il+lm+vkg++++h+kSHLQ+YR+ KN539341.1_FGP003 18 PRMRWTEELHRQFVEAVECLGGQDEATPKRILQLMGVKGVSISHIKSHLQMYRS 71 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.1E-29	14	72	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.886	14	74	IPR017930	Myb domain
SuperFamily	SSF46689	8.24E-17	18	71	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-24	18	71	IPR006447	Myb domain, plants
Pfam	PF00249	6.7E-9	19	70	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MGGFERRGVR QYNRSEVPRM RWTEELHRQF VEAVECLGGQ DEATPKRILQ LMGVKGVSIS 60 HIKSHLQMYR SGSSNSNNPV SLQKLTSATV NNISKREFVN SEDCCIYASG DRNTASSDKN 120 TYTILRCARS SMPSIEEIFR NWEQTRGRLL PWNSNVITTE QATRASRQTT NYSKPLKQLT 180 DCDLTLSIGQ LWEDAAGSDA DGSSTISEEV AAPSRDEAFV SSADDHFAAA AAKKESNMLT 240 TDLNLDLTIS SSWLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-17	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-17	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-17	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-17	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-17	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-17	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-17	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-17	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-17	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539341.1_FGP003

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU406763	0.0	CU406763.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C005B16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641452.1	1e-180	probable transcription factor KAN3
TrEMBL	A2YG18	1e-179	A2YG18_ORYSI; Uncharacterized protein
TrEMBL	Q653M8	1e-179	Q653M8_ORYSJ; Os06g0670300 protein
STRING	OS06T0670300-01	1e-179	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5493	37	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	1e-28	G2-like family protein