PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539318.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 129aa MW: 14719.3 Da PI: 10.1762 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.8 | 5.1e-08 | 70 | 106 | 11 | 47 |
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 l++++ ++G g+W+ I+r +Rt+ q+ s+ qky KN539318.1_FGP001 70 LFLEGLDRYGRGDWRNISRFSVRTRTPTQVASHAQKY 106 89**********************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 7.51E-6 | 70 | 107 | No hit | No description |
Pfam | PF00249 | 1.5E-5 | 70 | 106 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 9.1E-11 | 70 | 110 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 5.64E-11 | 70 | 111 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.4E-5 | 70 | 105 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MNDDGKNRTL QEHSSAAAHR IARFGETNPQ KAGEKRGETR RFQSECAWVD ALSMNDDSFT 60 LGEDYLKLSL FLEGLDRYGR GDWRNISRFS VRTRTPTQVA SHAQKYFIRQ ANAGARDSKR 120 KSIHDITTP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539318.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111571 | 6e-98 | AK111571.1 Oryza sativa Japonica Group cDNA clone:J013071A13, full insert sequence. | |||
GenBank | AP003611 | 6e-98 | AP003611.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0423B08. | |||
GenBank | AP014957 | 6e-98 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 6e-98 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | J3L638 | 4e-36 | J3L638_ORYBR; Uncharacterized protein | ||||
STRING | OB01G46940.1 | 7e-37 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2895 | 36 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 1e-24 | Homeodomain-like transcriptional regulator |