PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539286.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 649aa    MW: 69767.7 Da    PI: 4.8132
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539286.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.65.5e-13561061161
                        HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  11 qkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                         +NR++A+  R+RKka++ eLe +vk Le  N++L ++l++l++e + l++
  KN539286.1_FGP001  56 LRNRVSAQQARERKKAYMSELEARVKDLERSNSELEERLSTLQNENQMLRQ 106
                        79********************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579591.69E-1152108No hitNo description
SMARTSM003383.3E-952110IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.7E-1653110No hitNo description
CDDcd147044.20E-2255102No hitNo description
PfamPF001704.4E-1156106IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.15157111IPR004827Basic-leucine zipper domain
PfamPF035528.3E-11256293IPR005150Cellulose synthase
PfamPF035521.3E-92294489IPR005150Cellulose synthase
PfamPF035521.8E-22530642IPR005150Cellulose synthase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030244Biological Processcellulose biosynthetic process
GO:0016020Cellular Componentmembrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016760Molecular Functioncellulose synthase (UDP-forming) activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MDSDDEEIVG RVPEFGLALP GTSTSGRGSV RVAAPCLDIK VQITNQYYPN NQTILLRNRV  60
SAQQARERKK AYMSELEARV KDLERSNSEL EERLSTLQNE NQMLRQVLKN TTANRRGPDS  120
SAGGDSYSEM DGESPEIMPV ECPDPEPASS ESGDDHDIPE PLSSRLSVPS GELNLYRAAV  180
ALRLVLLAAF FRYRVTRPVA DAHALWVTSV ACELWLAASW LIAQLPKLSP ANRVTYLDRL  240
ASRYEKGGEA SRLAGVDVFV AAADAAREPP LATANTVLSV LAVDYPAGGV ACYREYEEFK  300
VRMNHLAARA RKVPEEGWIM SDGTPWPGNN SRDHPAMIQV LLGHPGDRDV DGGELPRLFY  360
VSREKRPGFR HHGKAGAMNA LLRVSAVLTN GACVLNLDCD HCVNNSSALR EAMCFMMDPV  420
AGNRTCFVQF ALRDSGGDGD DGGGGGDSVF SDIEMKCLDG IQGPVYVGSG CCFSRKALYG  480
FEPAAAADDG DDMETAADWR RIACTGIDVA FSTETAASPP KRPAAGDDDG EEEAALASEI  540
TMRWTNLVVA PTSVVVANLA GVVVAVAYGV DHGYYQSWGA LGAKLALAGW VVAHLQGFLR  600
GLLAPRDRAP PTIAVLWSVV FVSVASLLWV HAASFSAPTA APTTEQPIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5jnp_A3e-3029135860127Probable cellulose synthase A catalytic subunit 8 [UDP-forming]
5jnp_B3e-3029135860127Probable cellulose synthase A catalytic subunit 8 [UDP-forming]
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539286.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036120.0AP003612.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0457B11.
GenBankAP0036150.0AP003615.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0486H12.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641259.10.0putative cellulose synthase A catalytic subunit 11 [UDP-forming]
SwissprotQ69XK50.0CESAB_ORYSJ; Putative cellulose synthase A catalytic subunit 11 [UDP-forming]
TrEMBLA0A0D3GIF00.0A0A0D3GIF0_9ORYZ; Uncharacterized protein
STRINGOBART06G20250.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1427255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.11e-21bZIP family protein