PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539222.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 287aa    MW: 31895.4 Da    PI: 10.1008
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539222.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.42.3e-15163214155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  KN539222.1_FGP003 163 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 214
                        57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.29E-25163224No hitNo description
SuperFamilySSF541712.81E-18163224IPR016177DNA-binding domain
PfamPF008472.8E-10163214IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-18164223IPR001471AP2/ERF domain
SMARTSM003801.5E-33164228IPR001471AP2/ERF domain
PROSITE profilePS5103219.045164222IPR001471AP2/ERF domain
PRINTSPR003677.4E-5165176IPR001471AP2/ERF domain
PRINTSPR003677.4E-5204224IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MATMNNWLAF SLSPQDQLPP SQANSTLISA AAATTTTTGD SSAGDVCFNI PQGIDGQGGM  60
RLISGTTAAE EKAKLARVVK VVMTKRKKLL ELMIWLLSNT GARRRRQIFR VMMITKTVLK  120
GNGFCIFQVN NYEKELEEMK HMTRQEFVAS LRRKSSGFSR GASIYRGVTR HHQHGRWQAR  180
IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGLNAVTN FDMSRYDVKS ILDSAALPVT  240
FPAGLYDSAA MHKYNEIQLV PDEFTSQQTF HIVTVHRFSV SVVEESG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
185105RKKLLELMIWLLSNTGARRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539222.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2408920.0AK240892.1 Oryza sativa Japonica Group cDNA, clone: J065030K10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634444.14e-71AP2-like ethylene-responsive transcription factor PLT1
TrEMBLJ3L6S93e-81J3L6S9_ORYBR; Uncharacterized protein
STRINGOB01G49350.15e-82(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.18e-63AINTEGUMENTA-like 5