PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539216.1_FGP012
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 281aa    MW: 30876.6 Da    PI: 7.1184
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539216.1_FGP012genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.1e-09116163455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  KN539216.1_FGP012 116 SHSLAERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 163
                        8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.50E-11110167No hitNo description
SuperFamilySSF474592.49E-17110179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-17112176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.542112162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-7116163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-10118168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAGFSHLPQQ MEHGLITNNG FLFCHGHGGA ATTTAPAIPK DASMETSSVV LDTSPQDKKR  60
KPREEDTASL NSAHSKEAKE NGKKRGGKKH SRDQMEEEAP QGFIHVRARR GQATDSHSLA  120
ERVRRERISE RMRMLQALVP GCDKVTGKAL ILDEIINYVQ SLQNQVEFLS MRIASLSPVL  180
YGFGIDSDAF SDHSQKMEGM FHEAVAIPAS VLNRGSSPAQ SHAIMDTSNT SPTPYTLQVQ  240
GGSNNNSLSQ DNGSYIMQTV GEPRQELFNQ VVLNNYMCSF Q
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539216.1_FGP012
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0661880.0AK066188.1 Oryza sativa Japonica Group cDNA clone:J013053A18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611378.10.0transcription factor bHLH137
RefseqXP_015611379.10.0transcription factor bHLH137
TrEMBLA0A0E0ETQ20.0A0A0E0ETQ2_9ORYZ; Uncharacterized protein
STRINGOMERI09G11780.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.28e-41bHLH family protein