PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539202.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 661aa    MW: 74195.4 Da    PI: 8.8285
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539202.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92e-07471512240
                        SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                        ++W  eE ell +a++++++g   +W+ +++ +g+gR+ +++
  KN539202.1_FGP003 471 KPWGREEIELLRKAIQKYPKGtsrRWEVVSEFIGTGRSVEEI 512
                        68***********************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465652.49E-2075174IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1104.0E-2092186IPR001623DnaJ domain
SMARTSM002712.6E-1595170IPR001623DnaJ domain
CDDcd062575.31E-1396167IPR001623DnaJ domain
PROSITE profilePS5007618.04596178IPR001623DnaJ domain
PfamPF002261.2E-1796175IPR001623DnaJ domain
PRINTSPR006252.8E-8101119IPR001623DnaJ domain
PRINTSPR006252.8E-8119134IPR001623DnaJ domain
PRINTSPR006252.8E-8150170IPR001623DnaJ domain
PROSITE patternPS006360155174IPR018253DnaJ domain, conserved site
PROSITE profilePS500905.959465520IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.2E-4466512IPR009057Homeodomain-like
SMARTSM007171.4E-5469522IPR001005SANT/Myb domain
PfamPF002493.5E-6471512IPR001005SANT/Myb domain
SuperFamilySSF466896.69E-7471514IPR009057Homeodomain-like
CDDcd001671.26E-4472512No hitNo description
SMARTSM007173.3E-6601653IPR001005SANT/Myb domain
SuperFamilySSF466891.2E-7602650IPR009057Homeodomain-like
PfamPF002491.8E-5604646IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-4604646IPR009057Homeodomain-like
CDDcd001675.44E-5604646No hitNo description
PROSITE profilePS500906.098605646IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MDYQTSCLLI TYSPEIIDGA PLYVSSNCLP IKACKYEPAG HSFHAAALKL LGLGEQEDTE  60
TDDRSVSSDD KSQDFSAASD TFSSKGKKKS GSQQQDHYAL LGLGHLRFLA TEDQIRKSYR  120
DMALKHHPDK QASLILAEAT EEAKQAKKDE IESHFKAIQE AYEVLIDPTK RRIFDSTDEF  180
DDDIPTDCAP QDFYKVFGPA FMRNGRWSVN QTIPSLGDDA TPVEEVDKFY NFWYNFKSWR  240
EFPHADEYDL EQAESREHKR WMERQNAKLQ EKAKKVEYAR VRTLVDNAYK KDPRIQRRKE  300
EEKAEKQRRK EAKYLAKKMQ EEEAARAAEE ERKRKEEEAK RAAEAALNQK KLKEKEKKLL  360
RKEKTRLRNL VAPVVAESHF SLSEDDVETA CSSLDMERLK KLCDSMENKD TTEKARLLSG  420
ALSKEGSSGT SNEGKKIQAN GVDGSKAKST SSGEKVTQGN TLSNYEKKEE KPWGREEIEL  480
LRKAIQKYPK GTSRRWEVVS EFIGTGRSVE EILKATKTVL LQKPDSTKAF DSFLEKRKPA  540
PSIASPLSVR TETVGLPTEK AAGNASSKAP AQPASSKTSD EKAAAPAPAP VSNGTPSGTA  600
DPEAWSEAQV LALVQALKAF PKDASQRWER VAAAVPGKTM VQCKKKVAEM QKNFRSKKSA  660
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A2e-1919229620124Zuotin
5dje_B2e-1919229620124Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331352RKRKEEEAKRAAEAALNQKKLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539202.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8550890.0CR855089.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0135C09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652199.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLA0A0E0P8260.0A0A0E0P826_ORYRU; Uncharacterized protein
STRINGORUFI04G10860.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain