PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539185.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 282aa    MW: 30957.1 Da    PI: 9.902
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539185.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.65.7e-101441811954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  KN539185.1_FGP006 144 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 181
                        665559******************************98 PP
2BELL120.29.1e-39576172
               BELL  1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                       erqelq+kk kL+++l+eV++rY+qy++q+q+v++sFeavag gsa+ Yt+lAl++iSr+FrcL+daia+q+
  KN539185.1_FGP006  5 ERQELQMKKGKLINMLDEVEQRYRQYHQQMQVVVASFEAVAGGGSARTYTALALRTISRQFRCLRDAIAGQV 76
                       79********************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.3E-20174IPR006563POX domain
PfamPF075267.6E-36173IPR006563POX domain
PROSITE profilePS5007112.228122185IPR001356Homeobox domain
CDDcd000861.07E-12125186No hitNo description
SMARTSM003891.2E-9125189IPR001356Homeobox domain
SuperFamilySSF466899.41E-18126192IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-29128191IPR009057Homeodomain-like
PfamPF059208.2E-19142181IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MSTAERQELQ MKKGKLINML DEVEQRYRQY HQQMQVVVAS FEAVAGGGSA RTYTALALRT  60
ISRQFRCLRD AIAGQVRAAS RALGEAVDAD GGCGRTVGSR LRYIDHQLRQ QRALQQLGMM  120
QSSAWRPQRG LPERSVSILR AWLFEHFLHP YPKDSDKIML AKQTGLTRSQ VSNWFINARV  180
RLWKPMVEEM YLEETKDQDG GGAGAGDEGS KPGGSKGGGA GVNGGVVDSA AKMDSKAAHM  240
ESGGGVHPSL LELAGYRKRG RGVYHDVQGY MDLDIGSNVK SE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A6e-18131188158Homeobox protein Meis1
4xrs_B6e-18131188158Homeobox protein Meis1
5bng_A5e-18131189159Homeobox protein Meis2
5bng_B5e-18131189159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539185.1_FGP006
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1332170.0AC133217.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0052H02, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616922.11e-146BEL1-like homeodomain protein 1
RefseqXP_015616923.11e-146BEL1-like homeodomain protein 1
RefseqXP_015616924.11e-146BEL1-like homeodomain protein 1
RefseqXP_015616925.11e-146BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-100BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A0E0IYH61e-145A0A0E0IYH6_ORYNI; Uncharacterized protein
TrEMBLB8BJ811e-145B8BJ81_ORYSI; Uncharacterized protein
TrEMBLQ2RAA71e-145Q2RAA7_ORYSJ; Associated with HOX family protein, expressed
STRINGONIVA11G03780.11e-146(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48163758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.33e-93BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]