PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539175.1_FGP013 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 356aa MW: 39749.7 Da PI: 8.3752 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.8 | 8.1e-13 | 217 | 301 | 3 | 83 |
EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS...-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg...rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 k+lt+sdv++ gr+vlpkk ae+ + ++ + l + d +W++k++y ++ks++y+l eF k +gL++gD+++++ KN539175.1_FGP013 217 KELTKSDVGNVGRIVLPKKDAEASlpPLLQRDPLILHMDD--MvlpVTWKFKYRYwpNNKSRMYILD-SAGEFLKTHGLQAGDVIIIY 301 899******************9998844445565566666..3446*********777777777777.99***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.7E-20 | 214 | 303 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.73E-18 | 214 | 309 | No hit | No description |
SuperFamily | SSF101936 | 8.24E-16 | 214 | 302 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.3E-5 | 215 | 312 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-9 | 217 | 301 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MEGGAEPPHL HNHNHNHNHN HNTHNSQNHN HNHNAAPHPC HTPTPTPTPR GFADWSASTS 60 AFTSLAAHSS TAPSNAVHYS FSPCYAFWTH YMLNKNAYPT SFPAPHDDHL RLANNNHPRD 120 APGPASSYGV ESFTSPSMAP NICTHMPPIE GPISAKEDKK PEILPRVVKS SDELETRNSN 180 VEFHSETVGT LPESKQGHDS RATKLLNSGE YQVILRKELT KSDVGNVGRI VLPKKDAEAS 240 LPPLLQRDPL ILHMDDMVLP VTWKFKYRYW PNNKSRMYIL DSAGEFLKTH GLQAGDVIII 300 YKNLAPGKFG RTWTHHKLAI QEKLKVSSIF ISLVATITWT KIKEAHAAWT CLTLNE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9c_A | 1e-29 | 212 | 303 | 10 | 101 | B3 domain-containing transcription factor LEC2 |
6j9c_D | 1e-29 | 212 | 303 | 10 | 101 | B3 domain-containing transcription factor LEC2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator involved in iron deficiency response and tolerance. May regulate directly iron transporters or other transcription factors involved in iron-deficiency response. Binds specifically to the DNA sequence 5'-CATGC-3' of the IDE1 element found in the promoter of the barley iron deficiency-inducible gene IDS2. {ECO:0000269|PubMed:18025467}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539175.1_FGP013 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated during the early stage of iron deficiency (at protein level). {ECO:0000269|PubMed:27137867}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107456 | 0.0 | AK107456.1 Oryza sativa Japonica Group cDNA clone:002-128-C10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648159.1 | 0.0 | B3 domain-containing protein IDEF1 isoform X1 | ||||
Swissprot | Q6Z1Z3 | 0.0 | IDEF1_ORYSJ; B3 domain-containing protein IDEF1 | ||||
TrEMBL | A0A0E0APS3 | 0.0 | A0A0E0APS3_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM08G00080.2 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11346 | 28 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 6e-31 | B3 family protein |