PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539167.1_FGP009 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | DBB | ||||||||
Protein Properties | Length: 134aa MW: 14870.2 Da PI: 8.5723 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.1 | 7.5e-08 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ + + ++ fC ++ lC+ C H+ H+ KN539167.1_FGP009 4 QCDVCAAEAASVFCWADGAALCDACDHRVHRAnklagkHS 43 7***************************9*7666666665 PP | |||||||
2 | zf-B_box | 22.9 | 1.8e-07 | 62 | 89 | 4 | 31 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedCll 31 + C+ ++ek+ lfC++++ lC++C + KN539167.1_FGP009 62 PLCDICQEKRGFLFCKEDRAILCRECDV 89 78************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.1E-9 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.855 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.37E-6 | 3 | 47 | No hit | No description |
Pfam | PF00643 | 1.8E-6 | 4 | 44 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.8E-5 | 59 | 102 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.674 | 59 | 102 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.6E-5 | 62 | 93 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.30E-6 | 62 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MKVQCDVCAA EAASVFCWAD GAALCDACDH RVHRANKLAG KHSRFSLLNP SASGRSPTTM 60 APLCDICQEK RGFLFCKEDR AILCRECDVP AIVNAKHRVQ KYRGTTSGVL DRDSYMLWWL 120 GQVYKASRPI LPPP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539167.1_FGP009 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071507 | 1e-129 | AK071507.1 Oryza sativa Japonica Group cDNA clone:J023090D24, full insert sequence. | |||
GenBank | HQ858819 | 1e-129 | HQ858819.1 Oryza sativa Japonica Group isolate UT1236 ORPHANS transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623928.1 | 1e-53 | B-box zinc finger protein 20 | ||||
Swissprot | Q9LQZ7 | 8e-35 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | Q6H630 | 3e-52 | Q6H630_ORYSJ; ORPHANS transcription factor | ||||
STRING | OS02T0646200-01 | 4e-53 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2392 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 3e-37 | salt tolerance homolog2 |