PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539153.1_FGP011

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LSD

Protein Properties

Length: 1115aa MW: 116794 Da PI: 3.7174

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539153.1_FGP011	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	34.7	3e-11	1025	1049	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr+lL+Y+rGA +V+C++C+t+ KN539153.1_FGP011 1025 CGSCRILLAYFRGAGYVHCTCCQTM 1049 ***********************96 PP
2	zf-LSD1	40.9	3.4e-13	1063	1087	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C tlL+YP+GAp+V+C+lC +V KN539153.1_FGP011 1063 CGHCATLLMYPFGAPAVKCSLCLFV 1087 **********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.1E-10	1022	1052	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.5E-7	1025	1048	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	3.4E-8	1061	1088	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.9E-10	1063	1087	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 1115 aa Download sequence Send to blast
MEVMYGETDA SAVSVSPVLG SAEADATEID VIAGMQEEAP GSTPAMVVMY GETDTAAVSV 60 SPVLESREPD AAEGDVVAGV QEAHGSKFSM EVMYRETDAA AVSVSPVLES GEPDKAENDA 120 VEEMQEEAHG SRFAMEAMYE EPDASAVSVS PVLESVEPDV TEIDVVSEMQ EEEAPDSTLA 180 MEVTSGETDT AAVSACPVLD GGDPDAAEKN VVAGMQEEEA PDSTLAIEVT SGETDTAAVI 240 VSPVLEGVDP DAAEIDVVAG MQEEAPGSTL AMEVTYRETD ATAASVSPVL ESVEPDAAKI 300 DVVARMQEEA PGSTLAMEVT YREVDAATVS VSPVLESVEP DAAKIDVVAR MQEEAPGSKL 360 AMEVMYGETG TAAVSVPLVL ESGEEGSLQE SMQRPSSPTM NIEQESTQRP FSPTIGIETS 420 SPEMAPAGSE NCKVSWLPLP PPTPLGESMP SLPVAAAPKV LLVMPEEAVE SVPSSEALDA 480 EKPASITQAE PSSPNTPPPG FENFKSSWLP LPTTPPLVET TDVLPDVVVT KAVEAPIEEV 540 SRPLPALEVT NMESDTVLSI LPTTVLPTEG TEGLLQQPLL RPPSPVVQSE PCLQNEMAPP 600 GFENFKSSSE PCSAEEIAPP GSDNFKSSSE PCSPEEMAPP GFENFKSSSE PCSQEEMAPP 660 GFENFKSSWP PLPTLPQTVP DAAAADALAA TVEEAAGPPP ALELEAMDVD MDAIHPPPLP 720 FDSGVESSQK PLPRAPSPIM QEAPCSPDRA PPGFETYKSS QLLLPSPSLA QTTNVRQDQS 780 VTEPVSVIEE APQPLHSVEV MGAHMDAVPP LLPSSESGAD GLSPQQFAQP PPAEKDTTTC 840 LPDMVHSGCD NSEPSQLLSL PAVISPVQTP DGLADVPAID RVAVALEESP QRPLVSGEME 900 AGTVPIQSSP LKNVSEGSLP QLESESHSPT SQAADSLLDA SDSKSVAVAS EEMSQLPLAS 960 QATTTDLVSM TAMQPQSEGI VDESLQPQHP PSSTAHDSPC LQDSVPLVPP PPSPYLNKEV 1020 GQMVCGSCRI LLAYFRGAGY VHCTCCQTMN YVLEAHEVGK VHCGHCATLL MYPFGAPAVK 1080 CSLCLFVTEI GERNVRRRLS IEQPTRTNSS GLAEA

Sequence ? help Back to Top

Protein Sequence Length: 1115 aa Download sequence Send to blast

MEVMYGETDA SAVSVSPVLG SAEADATEID VIAGMQEEAP GSTPAMVVMY GETDTAAVSV  60
SPVLESREPD AAEGDVVAGV QEAHGSKFSM EVMYRETDAA AVSVSPVLES GEPDKAENDA  120
VEEMQEEAHG SRFAMEAMYE EPDASAVSVS PVLESVEPDV TEIDVVSEMQ EEEAPDSTLA  180
MEVTSGETDT AAVSACPVLD GGDPDAAEKN VVAGMQEEEA PDSTLAIEVT SGETDTAAVI  240
VSPVLEGVDP DAAEIDVVAG MQEEAPGSTL AMEVTYRETD ATAASVSPVL ESVEPDAAKI  300
DVVARMQEEA PGSTLAMEVT YREVDAATVS VSPVLESVEP DAAKIDVVAR MQEEAPGSKL  360
AMEVMYGETG TAAVSVPLVL ESGEEGSLQE SMQRPSSPTM NIEQESTQRP FSPTIGIETS  420
SPEMAPAGSE NCKVSWLPLP PPTPLGESMP SLPVAAAPKV LLVMPEEAVE SVPSSEALDA  480
EKPASITQAE PSSPNTPPPG FENFKSSWLP LPTTPPLVET TDVLPDVVVT KAVEAPIEEV  540
SRPLPALEVT NMESDTVLSI LPTTVLPTEG TEGLLQQPLL RPPSPVVQSE PCLQNEMAPP  600
GFENFKSSSE PCSAEEIAPP GSDNFKSSSE PCSPEEMAPP GFENFKSSSE PCSQEEMAPP  660
GFENFKSSWP PLPTLPQTVP DAAAADALAA TVEEAAGPPP ALELEAMDVD MDAIHPPPLP  720
FDSGVESSQK PLPRAPSPIM QEAPCSPDRA PPGFETYKSS QLLLPSPSLA QTTNVRQDQS  780
VTEPVSVIEE APQPLHSVEV MGAHMDAVPP LLPSSESGAD GLSPQQFAQP PPAEKDTTTC  840
LPDMVHSGCD NSEPSQLLSL PAVISPVQTP DGLADVPAID RVAVALEESP QRPLVSGEME  900
AGTVPIQSSP LKNVSEGSLP QLESESHSPT SQAADSLLDA SDSKSVAVAS EEMSQLPLAS  960
QATTTDLVSM TAMQPQSEGI VDESLQPQHP PSSTAHDSPC LQDSVPLVPP PPSPYLNKEV  1020
GQMVCGSCRI LLAYFRGAGY VHCTCCQTMN YVLEAHEVGK VHCGHCATLL MYPFGAPAVK  1080
CSLCLFVTEI GERNVRRRLS IEQPTRTNSS GLAEA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539153.1_FGP011

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK065375	0.0	AK065375.1 Oryza sativa Japonica Group cDNA clone:J013008L21, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015621461.1	0.0	protein LOL5
TrEMBL	A0A0D9YBM7	0.0	A0A0D9YBM7_9ORYZ; Uncharacterized protein
STRING	OGLUM01G26320.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13395	25	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	3e-29	lsd one like 2