PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539152.1_FGP009

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 165aa MW: 17920.6 Da PI: 7.912

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539152.1_FGP009	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.1	4.7e-41	59	158	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrr+Ca++C++apyf ++p+kfa+vhk+FGasnv+k+l ++ e er da+sslvyeA+ r+rdPvyG++g i+ lqqq++ l+a KN539152.1_FGP009 59 PCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGEAERADAASSLVYEANLRLRDPVYGCMGAISMLQQQVNALEA 150 7***************************************************************************************** PP DUF260 93 elallkee 100 el+++++e KN539152.1_FGP009 151 ELEAVRAE 158 *99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.171	58	159	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.4E-41	59	156	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MSTERERLDE IGKKIKREPD TAGLVVAAVA GTGTGTATPI EHRVPHRLGL GGAVNTVTPC 60 AACKLLRRRC AQECPFAPYF SPHEPHKFAA VHKVFGASNV SKMLLEVGEA ERADAASSLV 120 YEANLRLRDP VYGCMGAISM LQQQVNALEA ELEAVRAEIF KHRLE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-41	59	162	11	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-41	59	162	11	114	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539152.1_FGP009

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121919	0.0	AK121919.1 Oryza sativa Japonica Group cDNA clone:J033106D14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636038.1	1e-115	LOB domain-containing protein 15
Swissprot	Q9AT61	4e-68	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A0D3EVQ2	1e-114	A0A0D3EVQ2_9ORYZ; Uncharacterized protein
TrEMBL	A0A0D9YGR2	1e-114	A0A0D9YGR2_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0FV62	1e-114	A0A0E0FV62_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0N4D0	1e-114	A0A0E0N4D0_ORYRU; Uncharacterized protein
TrEMBL	B8ABL7	1e-114	B8ABL7_ORYSI; Uncharacterized protein
TrEMBL	Q5QMB4	1e-114	Q5QMB4_ORYSJ; Os01g0825000 protein
STRING	OGLUM01G39690.1	1e-115	(Oryza glumipatula)
STRING	ORUFI01G39050.1	1e-115	(Oryza rufipogon)
STRING	OS01T0825000-01	1e-115	(Oryza sativa)
STRING	ONIVA01G40640.1	1e-115	(Oryza nivara)
STRING	OBART01G35680.1	1e-115	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	4e-64	LOB domain-containing protein 15

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]