PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539144.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 375aa    MW: 40804.4 Da    PI: 6.9625
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539144.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.25.4e-11188232549
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 
                        kr +r   NR +A+rsR RK+++i eLe+ v +L++e +aL  ++
  KN539144.1_FGP002 188 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSALSPRV 232
                        8999*********************************99998665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.6E-14184248IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.76186242IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.69E-11188242No hitNo description
PfamPF001707.1E-10188238IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.1E-14188242No hitNo description
CDDcd147032.68E-24189239No hitNo description
PROSITE patternPS000360191206IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MAQLPPKIPT MATAWPEFGG GHHHHAAHGH HHQRSPSMGA FLAAPLPPFP LPPPAPANGG  60
AQQQQQQHQP SWVDEFLDFS AAKRGAHRRS VSDSVAFLDP VSDDNAGVGA HDFDRLDDDQ  120
LMSMFSDDLQ PPPPQQQPTA PAASASSPSD HNSMNDEKQD KGETEEAQSE CDGATPGQPA  180
SPATVDPKRV KRILANRQSA QRSRVRKLQY ISELERSVTS LQTEVSALSP RVAFLDHQRS  240
LLTLGNSHLK QRIAALAQDK IFKDGDRHLP PQLCYYSIYR SHNVAVRIQF GQHPCNQNST  300
AKLTLVLNSL FSALLCSAHQ EALKKEIERL RQIYHQQSLK NAESQPADAA PVRGSDNADL  360
IGSEGAAAAA PCPHS
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539144.1_FGP002
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by dehydration and salt stress. {ECO:0000269|PubMed:18065552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1009440.0AK100944.1 Oryza sativa Japonica Group cDNA clone:J023138F18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635844.11e-168basic leucine zipper 2
SwissprotQ5QNI51e-134BZP02_ORYSJ; Basic leucine zipper 2
TrEMBLA0A0D9Y5311e-169A0A0D9Y531_9ORYZ; Uncharacterized protein
STRINGOGLUM01G08020.11e-169(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132238125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.14e-84bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]