PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539105.1_FGP012
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 291aa    MW: 32017.3 Da    PI: 5.226
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539105.1_FGP012genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.62.7e-19421221499
                        T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          +++p +fa++++g    s ++ l+++sg++W++ +   +++ +  vl++GWkeFv+ang++e+D ++F+++g s+f   v +f+ 
  KN539105.1_FGP012  42 ESMTVPARFANNFNGH--ISEEVNLRSPSGETWSIGV--ANSDAGeLVLRSGWKEFVDANGVQENDCLLFRYSGVSSF--DVLIFDP 122
                        4599******888666..6779***************..5555445***************************99999..8888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-2427125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.74829123IPR003340B3 DNA binding domain
SuperFamilySSF1019361.39E-2330128IPR015300DNA-binding pseudobarrel domain
CDDcd100171.90E-2030121No hitNo description
SMARTSM010193.3E-1132123IPR003340B3 DNA binding domain
PfamPF023622.6E-1642121IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGMLKIGKNC SVCKEWQEHC YWSHMADHSK HFLKHMVGDF TESMTVPARF ANNFNGHISE  60
EVNLRSPSGE TWSIGVANSD AGELVLRSGW KEFVDANGVQ ENDCLLFRYS GVSSFDVLIF  120
DPSGCEKASP HFVGSHGFGG AENSAGAEQG GGNGRRTPPI VDGDNGHRHH LEMTLHRNGC  180
RSIPSACKRS LFSDESEAKE NDDEDDEEDV VAAAGGGCYG EYYFSKHGRV AEYNLREEDR  240
EEISRVPVPV EPGNPVFVQV IHSSHVRSSK YCIVGVSPEF AGKYLGAVER E
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539105.1_FGP012
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086600.0AK108660.1 Oryza sativa Japonica Group cDNA clone:002-148-F01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628568.10.0B3 domain-containing protein Os03g0622200
SwissprotQ10GM30.0Y3222_ORYSJ; B3 domain-containing protein Os03g0622200
TrEMBLB8AML50.0B8AML5_ORYSI; Uncharacterized protein
STRINGOS03T0622200-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-27B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]