PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539102.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 291aa    MW: 30540.9 Da    PI: 5.8606
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539102.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.1e-08195241455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        + + + + RR+ri +++  L+el+P+      +K++ +++L +A+ Y+k +q
  KN539102.1_FGP001 195 TQSSAAKSRRERISERLRALQELVPSG-----GKVDMVTMLDRAISYLKFMQ 241
                        56677899*****************98.....8****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.6E-11189249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.59E-11189245No hitNo description
SuperFamilySSF474598.77E-13190250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.577191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-5195241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-10197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MAMVAGDEAM SMSWHDVGVV VDPEAAGTAP FAAAVSGYVP SYDQCQYYYY DHHHHHPCST  60
ELIHAGDAGS AVAVAHDDVD CLVHAAAAAT SPSSSSALTF DGHGEEHSAV SWMDMDMDAH  120
ATAPPLIGYG PTAATSSPSP CFSSGDSGMV MVTTTTPRSA AASGSQKRAR PPPSPSQGSE  180
LHEYSKKQRA NNKETQSSAA KSRRERISER LRALQELVPS GGKVDMVTML DRAISYLKFM  240
QLQLRVLETD AGWPAADGGA APDISRVKDA LDAIILSSSS PSPKASPPRS G
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539102.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8362780.0CT836278.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA023K08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642667.11e-144transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like
TrEMBLI1Q2E91e-144I1Q2E9_ORYGL; Uncharacterized protein
STRINGORGLA06G0131200.11e-145(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1880188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.11e-24ROOT HAIR DEFECTIVE6