PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539075.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 241aa    MW: 27268.8 Da    PI: 4.4451
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539075.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.9e-0986114129
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar 29 
                        +g+WT++Ed++lv+ v+++G ++W+ Ia+
  KN539075.1_FGP006  86 KGPWTEQEDLQLVCTVRLFGERRWDFIAK 114
                        79*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.10881114IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-782115IPR009057Homeodomain-like
SuperFamilySSF466891.42E-682115IPR009057Homeodomain-like
PfamPF002492.0E-786114IPR001005SANT/Myb domain
CDDcd001671.40E-588115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MESSVPMIMA DKKASAFHIR RTGKNIWKKP DRDFSKIPFP MAGVHQGSHP EAGANKHTEV  60
EEEQEDWLPA DTRVIDMVTV REETRKGPWT EQEDLQLVCT VRLFGERRWD FIAKVSETPS  120
MIIGIEEQEL HGGSGCITSI MKSTPVDMDG YPMDQIWMEI EAPNVLPGPC FDEAKDSASN  180
SLSGPLLPYP MWDYYCPETC LRMDDEIKSL MQHGYSISTW VLSTALYKVE EYAGGTDNTV  240
Q
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539075.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126201e-154CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
GenBankCT8332821e-154CT833282.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120H14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877776.13e-62myb-related protein MYBAS2 isoform X2
SwissprotQ4JL761e-63MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLA3CIJ47e-71A3CIJ4_ORYSJ; Uncharacterized protein
STRINGORGLA12G0141600.13e-62(Oryza glaberrima)
STRINGORGLA12G0206100.13e-62(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.32e-13myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]