PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539066.1_FGP009
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 418aa    MW: 45654.9 Da    PI: 8.8354
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539066.1_FGP009genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57.4e-116891326
                       S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                       ++ C++++rtG C++G +CkF+H+
  KN539066.1_FGP009 68 EPDCSYYMRTGLCRFGMTCKFNHP 91
                       789********************8 PP
2zf-CCCH38.91.4e-12113137327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C+++++tGtCk+G++CkF+H++
  KN539066.1_FGP009 113 QPECQYYLKTGTCKFGATCKFHHPR 137
                        799********************96 PP
3zf-CCCH18.34e-06159175319
                        S---SGGGGTS--TTTT CS
            zf-CCCH   3 telCrffartGtCkyGd 19 
                        +++C +++rtG+Ck+G+
  KN539066.1_FGP009 159 EKECAYYLRTGQCKFGS 175
                        679*************8 PP
4zf-CCCH39.68.5e-13285310227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++C+f+++tG Ck+G+ CkF+H++
  KN539066.1_FGP009 285 DQPECQFYMKTGDCKFGAVCKFHHPK 310
                        689*********************96 PP
5zf-CCCH38.51.9e-12330356127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C f++r+G+Ck+G++CkF H++
  KN539066.1_FGP009 330 PGEPICTFYSRYGICKFGPNCKFDHPM 356
                        5799*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-46592IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8686593IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-86891IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-57093IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-47192IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-6110137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244110138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6113139IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-10113137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-5116138IPR000571Zinc finger, CCCH-type
SMARTSM0035642156177IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.127156175IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5283310IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511283311IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9285310IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5286311IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4289310IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-6328355IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7329356IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178329357IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-10331356IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4334354IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MPRVAVKATP LMGRISFGAA REGLSAAATA VAVAASVIGP HSSAEEAMWQ MNLGEAMEAG  60
PYPERIGEPD CSYYMRTGLC RFGMTCKFNH PADRKMAVAA ARMKGEYPQR IGQPECQYYL  120
KTGTCKFGAT CKFHHPREKA AMATRVQLNA LGYPLRPNEK ECAYYLRTGQ CKFGSTWAVT  180
NWPLSRSASF IASPRWPGHS SYAQVIVPPG LVQVPGWNPY AAQIGSSSSD DQQRTAGGAQ  240
YYTGSRHSET PNMGDQGMFS SYQAGSVPLG LYTVQRESIF PERPDQPECQ FYMKTGDCKF  300
GAVCKFHHPK ERIIPTPNCA LSSLGLPLRP GEPICTFYSR YGICKFGPNC KFDHPMGTVM  360
YGLATSPTGD VSARRMLAPV PAHSEVSPDN VSGRSRRITH SDSQQIPSGE RGTEREAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539066.1_FGP009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9721480.0JX972148.1 Oryza sativa Japonica Group clone KCS005D01 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617448.20.0zinc finger CCCH domain-containing protein 63 isoform X2
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0E0MFC80.0A0A0E0MFC8_ORYPU; Uncharacterized protein
STRINGOPUNC11G11150.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-150zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]